Protein Model on 2amd assembly_id=1
(TEMPLATE: 
2amd
assembly_id:1
)Protein Model on 2amd assembly_id=1
(TEMPLATE: 2amd
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [309 aa] | 3C-like proteinase :R1AB_CVHSA | 1S 2G 3F 4R 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 285A(T) 286L(I) 290E 298R 299Q 300C 302G (identity: 94.3 %/96.0 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [304 aa] | 3C-like proteinase :R1AB_CVHSA | |
| 3 | c | C 1 (A) | non-polymer(9IN) | N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-D-LEUCINAMIDE | ||
| 4 | d | D 1 (B) | non-polymer(9IN) | N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-D-LEUCINAMIDE | 25T 26T 27L 41H 49M 140F 142N 143G 144S 145C 163H 164H 165M 166E 168P 172H 187D 188R 189Q 190T 191A 192Q (identity: 100.0 %/96.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:2amd_B_1 identity=96.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:********************************** ********** ****************** ******************** * ***** ******:
2amd_B_1 6:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK: 105
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG GGGSSS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeeeeebebeebbeeeeeeebebeeeeeebebebeeeeebbbebebeeebeebbe:
Contact :aaaa aaaaaa a ddd d d
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:********************************* ********************************************* ********************:
2amd_B_1 106:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI: 205
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbebeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeebbeb:
Contact : a aaaaaaaa aaaaadddd ddda d a a dddddd
Contact : d d d
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:* **************************************************************** ***************** **************:
2amd_B_1 206:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC: 305
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHGGGTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbebeeeebbeeeebeeeebbebbeeeebeebeeeebeebeebbeebebebeebbbbbeebbeeebeeeebeebeebbbbbbbebbeebb:
Contact : aa a aaa
queryA 301:SG: 302
:**:
2amd_B_1 306:SG: 307
SecStr :H :
ExpBur :ee:
Contact : a
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