Protein Model on 2q6f assembly_id=1
(TEMPLATE: 
2q6f
assembly_id:1
)Protein Model on 2q6f assembly_id=1
(TEMPLATE: 2q6f
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [294 aa] | Infectious bronchitis virus (IBV) main protease :Q3Y5H1_9CORO | 1S 2G 4R(K) 6M(L) 7A(V) 9P 10S 11G(S) 14E 122P(V) 123S(I) 124G 125V(L) 126Y 127Q(P) 137K(R) 138G(A) 139S 140F 141L 166E 170G(A) 172H 283G 284S(Q) 285A(Y) 286L(N) 299Q (identity: 50.0 %/43.4 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [295 aa] | Infectious bronchitis virus (IBV) main protease :Q3Y5H1_9CORO | |
| 3 | c | C 1 (D) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | 1S (identity: 100.0 %/43.4 %) | |
| 4 | d | D 1 (C) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | 25T(N) 26T(N) 27L 41H 48D(K) 140F 141L 142N(A) 143G 144S(A) 145C 163H 164H 165M(L) 166E 167L 168P 172H 187D 188R(E) 189Q(E) 190T(V) 191A 192Q (identity: 62.5 %/43.4 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:2q6f_B_1 identity=43.4% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTANPKTP: 99
:*** * ** ** * * * ****** * ****** * * ** * * * * * * ** * ** **:
2q6f_B_1 3:SGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVLG---KFSGDQWGDVLNLANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETP: 99
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG ---S TTHHHHHHHTS GGG EEE SSS EE EEEEEEETTEEEEEESS TT :
ExpBur :eeeeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbebbe---eeeeeebbeebeebeeeebebebeeeeebebeeeeeeebbbbbebeeebeeee:
Contact :aa a aa aaa a ddd d d
Contact :c
queryA 100:KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
:***** * * * * * * ** * ** *** * ******** * * **** *** * **** * *** ** ** * :
2q6f_B_1 100:KYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNL: 199
SecStr :SEEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEEETTTEEEEE TTS BGGG SSSS B:
ExpBur :eeebbebeebeebbbbbbeebebeeebebbbbebbbbeeebeeebbbbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeeeeeeeeee:
Contact : aaaaaa aaaaadddd dddadd a a dddddd
Contact : dd d d
queryA 200:ITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRT--ILGSALLEDE: 290
: * * ****** * * * * * * * * *** ** * * * *** ***:
2q6f_B_1 200:VTNNIVAWLYAAIISVXXXXXXXPKW-LESTTVSIEDYNRWASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE: 293
SecStr : HHHHHHHHHHHHHH ------- TT- SS HHHHHHHHHHHTB HH--HHHHHHHH --- HHHHHHHHHHHHH S BTTBSS S:
ExpBur :bbbbbbbbbbbbbeee-------eeb-eeeeebeeeebeeebeeeebbebeebeb--beebeeeeeb---ebbebbebbbebeeebeeeebeeeeebbbb:
Contact : aaaa
queryA 291:FTPFDVVRQ: 299
: ** * *:
2q6f_B_1 294:LTPESVFNQ: 302
SecStr :S HHHHHHT:
ExpBur :bbbebbeeb:
Contact : a
|
[help]