Protein Model on 3d23 assembly_id=1
(TEMPLATE: 
3d23
assembly_id:1
)Protein Model on 3d23 assembly_id=1
(TEMPLATE: 3d23
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | c(query A) |
| 1 | a | A 1 (B) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1AB_CVHN1 | 221N(Q) 222R(N) 223F(D) 270E(R) 273Q(M) 277N(Q) 279R (identity: 14.3 %/49.3 %) | |
| 2 | b | B 1 (A) | polymer(polypeptide(L)) [299 aa] | 3C-like proteinase :R1AB_CVHN1 | 2G 4R(V) 5K 6M 7A(V) 9P 10S(T) 11G(S) 14E 121S(R) 122P 123S(Q) 124G 125V(A) 126Y(F) 137K 138G 139S 141L 169T 170G 171V(C) 215G(N) 280T(Q) 285A(C) 286L(T) 298R(Q) 299Q 300C(L) (identity: 48.3 %/49.3 %) | |
| 3 | c | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [298 aa] | 3C-like proteinase :R1AB_CVHN1 | |
| 4 | d | D 1 (D) | polymer(polypeptide(L)) [299 aa] | 3C-like proteinase :R1AB_CVHN1 | 224T(V) (identity: 0.0 %/49.3 %) | |
| 5 | e | E 1 (H) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 6 | f | F 1 (F) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 7 | g | G 1 (E) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | 24T(S) 25T(M) 26T 27L 41H 140F 143G 144S 145C 163H 164H(Q) 165M(L) 166E 167L 172H 187D 189Q 190T(V) 191A(V) 192Q (identity: 70.0 %/49.3 %) | |
| 8 | h | H 1 (G) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| ALIGNMENTS |
| MODEL[3] Protein A "queryA" TEMPLATE:3d23_C_1 identity=49.3% |
queryA 2:GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKY: 101
:* ** * * * * * ** * ********* ********* * * * * ** * * * * * ** * * * * ** ****:
3d23_C_1 4:GIVKMVSPTSKIEPCIVSVTYGSMTLNGLWLDDKVYCPRHVICSSSNMNEPDYSALLCRVTLGDFTIMSGRMSLTVVSYQMQGCQLVLTVSLQNPYTPKY: 103
SecStr : TTTGGGEEEEEETTEEEEEEEETTEEEEEGGGG TTTSSS HHHHHHH GGGEEEEETTEEE EEEEEEETTEEEEEESS TT SE:
ExpBur :eeeeeeeeeeebeebbbbbbbeebebbbbbbeeebbbbbbbbbeeeeeeebebeebeeebeeeebebeeeeeebebeeeeeeebbbbbbbeeebeeebee:
Contact :b bbbb bbb b gggg g
queryA 102:KFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTIT: 201
: * ** ** *** *** * * ** ******* ******* * * * *** ** ** * *** ****** * * * * *:
3d23_C_1 104:TFGNVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQT: 203
SecStr :EE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B H:
ExpBur :eebebeebebbbbbbbbebeeeeeebbbbbebebbeeebeeebbbbbbbeeeeebbebbbbbbbebeeebbbbbbbebebbeebebbeeebeeeeeeebb:
Contact : bbbbbb bbbgb ggg ggggg bbbg g gggg
queryA 202:VNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCS: 301
:*** ****** * ** *** ** * * * * ** * * * * ** **** *** * ** * :
3d23_C_1 204:VNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLV--LDALASMTGVSIETLLAAIKRLYM-GFQGRQILGSCTFEDELAPSDVYQQLA: 300
SecStr :HHHHHHHHHHHHTT TT S HHHHHHHHHHHTB HH--HHHHHHHHS HHHHHHHHHHHTT- TT SSS SS SS HHHHHHHHT:
ExpBur :bbbbbbbbbbbeeebeebeeeeebeeeebbeebeeeebbebeeeee--beebbeeeebebebbbbbbeebee-ebeeeebeeeeebebbbbbebbeeeee:
Contact : b aaad a a a ab bb bbb
queryA 302:G: 302
:*:
3d23_C_1 301:G: 301
SecStr : :
ExpBur :e:
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