Protein Model on 3iwm assembly_id=1
(TEMPLATE: 
3iwm
assembly_id:1
)Protein Model on 3iwm assembly_id=1
(TEMPLATE: 3iwm
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | c(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1A_CVHSA | 1S 2G 4R 5K 6M 7A 9P 10S 11G 14E 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 166E 172H (identity: 100.0 %/96.0 %) | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1A_CVHSA | 285A(T) 286L(I) (identity: 0.0 %/96.0 %) | |
| 3 | c | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1A_CVHSA | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1A_CVHSA | ||
| 5 | e | C 1 (C) | polymer(polypeptide(L)) [300 aa] | 3C-like proteinase :R1A_CVHSA | 4R 123S 139S 141L (identity: 100.0 %/96.0 %) | |
| 6 | f | C 2 (C) | polymer(polypeptide(L)) [300 aa] | 3C-like proteinase :R1A_CVHSA | 298R 299Q 301S (identity: 100.0 %/96.0 %) | |
| 7 | g | D 1 (D) | polymer(polypeptide(L)) [300 aa] | 3C-like proteinase :R1A_CVHSA | 3F 4R 5K 6M 8F 109G 110Q 111T 127Q 128C 129A 131R 132P 197D 198T 199T 200I 201T 202V(L) 203N 204V 205L 206A 207W 208L 209Y 210A 211A 212V 213I 216D 218W 219F 220L 221N 222R 223F 224T 230F 238N 239Y 240E 242L 246H 249I 250L 253L 254S 256Q 257T 259I 260A 261V 263D 264M 265C 266A 267S(A) 268L 270E 279R 280T 281I 282L 283G 286L(I) 287L 288E 289D 290E 291F 292T 293P 295D 296V 298R 299Q 300C (identity: 96.2 %/96.0 %) | |
| 8 | h | D 2 (D) | polymer(polypeptide(L)) [300 aa] | 3C-like proteinase :R1A_CVHSA | ||
| 9 | i | E 1 (H) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 10 | j | E 2 (H) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 11 | k | F 1 (F) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | 24T 25T 26T 41H 54Y 140F 142N 143G 145C 163H 164H 165M 166E 168P 172H 187D 189Q 190T 192Q (identity: 100.0 %/96.0 %) | |
| 12 | l | F 2 (F) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 13 | m | G 1 (G) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 14 | n | G 2 (G) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 15 | o | H 1 (E) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 16 | p | H 2 (E) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| ALIGNMENTS |
| MODEL[3] Protein A "queryA" TEMPLATE:3iwm_B_1 identity=96.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:********************************** ********** ****************** ******************** * ***** ******:
3iwm_B_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK: 100
SecStr : THHHHTTEEEEESSS EEEEEEETTEEE TTSS SSSSSS HHHHBSSS TTS EEEETTEEEEEEEEEE SSSEEEEESS TT E:
ExpBur :eeeeeeeeebeebeebbbebbbeeeebbbbbbeebbbbbbebbbeeeeeeebebeebbeebeeeebebbeeeeebebebeeeeebbbebebeeebeeebe:
Contact :aagaaaagaaa a kkk k k
Contact : egg
Contact : g
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:********************************* ********************************************* ********************:
3iwm_B_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEETTEEEEEEEE B TTS B TT TT EEE EETTEEEE EEEEE TTS BEEE TT BSSS SSSSS :
ExpBur :eebeebeebeebbbbbbeebeeeeeebbebbebebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeeeee:
Contact : ggg aaaaaaag gg aaaaekk k kkka k a k kk k gggg
Contact : e gg ek k k
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:* **************************************************************** ***************** **************:
3iwm_B_1 201:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHTTT TT HHHHHHHHHHTT HHHHHHHHHHHHHTT HHHHHHHHHHHHTT SS BTTBSS HHHHHHH :
ExpBur :eeeeeeeeebbeeeeeeeeeeeeebeeeebbebbeeeeeeebeeeebeeeeeeeeeeeeebeeebbeebeebeeebeeeeeeebeeeeeeeeeeeeeeee:
Contact :ggggggggggggg g ggggggg g ggg g g gg gg gg ggg gggggg g ggggg bbggggggg gg ffg
Contact : g gg
queryA 301:S: 301
:*:
3iwm_B_1 301:S: 301
SecStr : :
ExpBur :e:
Contact :f
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