#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 3vb4 assembly_id=1

Protein Model on 3vb4 assembly_id=1 (TEMPLATE: 3vb4 assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [301 aa] 3C-like proteinase :R1A_CVHSA
2 b B 1 (B) polymer(polypeptide(L)) [306 aa] 3C-like proteinase :R1A_CVHSA 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 285A(T) 286L(I) 290E 299Q 301S (identity: 94.1 %/96.0 %)
3 c C 1 (E) polymer(polypeptide(L)) [5 aa] B4Z inhibitor 27L 41H 49M 140F 141L 143G 144S 145C 163H 164H 165M 166E 167L 168P 172H 187D 188R 189Q 190T 191A 192Q (identity: 100.0 %/96.0 %)
4 d D 1 (F) polymer(polypeptide(L)) [5 aa] B4Z inhibitor
5 e E 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 5K 126Y 127Q (identity: 100.0 %/96.0 %)
6 f F 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 35V(T) 80H 81S 88K(R) 90K (identity: 60.0 %/96.0 %)
7 g G 1 (A) non-polymer(EDO) 1,2-ETHANEDIOL 40R 84N (identity: 100.0 %/96.0 %)
8 h H 1 (B) non-polymer(EDO) 1,2-ETHANEDIOL
9 i I 1 (B) non-polymer(EDO) 1,2-ETHANEDIOL
10 j J 1 (B) non-polymer(EDO) 1,2-ETHANEDIOL 11G 12K (identity: 100.0 %/96.0 %)
11 k K 1 (B) non-polymer(GOL) GLYCEROL
12 l L 1 (B) non-polymer(EDO) 1,2-ETHANEDIOL
13 m M 1 (B) non-polymer(EDO) 1,2-ETHANEDIOL
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3vb4_A_1 identity=96.0%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
                :********************************** ********** ****************** ******************** * ***** ******:
3vb4_A_1       1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK: 100
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  SGGGSS  HHHHHHT  GGGEEEEETTEEE EEEEEEETTEEEEEESS  TT  E:    
ExpBur          :eebeeeebebeebeebbbbbbbeebebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebeeeeeebebeeeeeeebbbebebeeebeebbe:    
Contact         :bbbbbbbbbbbj b            c       f    gc       c                              ff  g   f f          
Contact         :    e     j                                                                                         

queryA       101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
                :********************************* ********************************************* ********************:
3vb4_A_1     101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI: 200
SecStr          :EEE    TT EEEEEEEETTEEEEEEEEEB TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS  SSSS        B :    
ExpBur          :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeeeeb:    
Contact         :                 b  bbbbbbbb        bbbbb ccc                 cccbcc b b              cccccc        
Contact         :                         ee            cc                        c     c                            

queryA       201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
                :* **************************************************************** *****************  **************:
3vb4_A_1     201:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC: 300
SecStr          :HHHHHHHHHHHHHTT  TT  S    HHHHHHHHGGGTB    HHHHHHTHHHHHHHT  HHHHHHHHHHHHHH  TT  BTTBSS      HHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebeebeeeebeebeebbeebebebeebbbbbbebbeeebeeeebeebeebebbbbbebbeeeb:    
Contact         :                                                                                    bb   b        b 

queryA       301:S: 301
                :*:
3vb4_A_1     301:S: 301
SecStr          : :    
ExpBur          :e:    
Contact         :b                                                                                                   


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