Protein Model on 3vb4 assembly_id=1
(TEMPLATE: 
3vb4
assembly_id:1
)Protein Model on 3vb4 assembly_id=1
(TEMPLATE: 3vb4
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [301 aa] | 3C-like proteinase :R1A_CVHSA | 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 115L 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 285A(T) 286L(I) 290E 299Q 302G 303V 304T 305F (identity: 94.4 %/96.1 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1A_CVHSA | |
| 3 | c | C 1 (E) | polymer(polypeptide(L)) [5 aa] | B4Z inhibitor | 1S (identity: 100.0 %/96.1 %) | |
| 4 | d | D 1 (F) | polymer(polypeptide(L)) [5 aa] | B4Z inhibitor | 41H 49M 54Y 140F 141L 143G 144S 145C 163H 164H 165M 166E 167L 172H 187D 189Q 190T 191A (identity: 100.0 %/96.1 %) | |
| 5 | e | E 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 5K 126Y 127Q (identity: 100.0 %/96.1 %) | |
| 6 | f | F 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 7 | g | G 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 8 | h | H 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 105R 106I 107Q 108P 182Y (identity: 100.0 %/96.1 %) | |
| 9 | i | I 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 245D 248D (identity: 100.0 %/96.1 %) | |
| 10 | j | J 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 11G 14E 15G 97K (identity: 100.0 %/96.1 %) | |
| 11 | k | K 1 (B) | non-polymer(GOL) | GLYCEROL | 108P 200I 240E 246H (identity: 100.0 %/96.1 %) | |
| 12 | l | L 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 247V 254S 260A 261V 262L (identity: 100.0 %/96.1 %) | |
| 13 | m | M 1 (B) | non-polymer(EDO) | 1,2-ETHANEDIOL | 133N 134F(H) 184P 185F 194A 195G (identity: 83.3 %/96.1 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:3vb4_B_1 identity=96.1% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:********************************** ********** ****************** ******************** * ***** ******:
3vb4_B_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG GGGGGS HHHHHHH GGG EEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbebbbeebebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebebeeeebebeeeebeebbbebebeeebeeebe:
Contact :aaaaaaaaaaa aj d d d j
Contact :c e j j
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:********************************* ********************************************* ********************:
3vb4_B_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEEB TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : hhhh a aaaaaaa mm aaaaa ddd dddad a a h mm d ddd mm k
Contact : k ee dd d d
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:* **************************************************************** ***************** **************:
3vb4_B_1 201:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHGGGTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebebeebbebbeeeebeebeeeeeeebeebbeeeebebeebbbbbeebbeeebeeeebbeeeebbbbbbbebbebee:
Contact : k ikli l lll aa a a
queryA 301:SGVTFQ: 306
:******:
3vb4_B_1 301:SGVTFQ: 306
SecStr :TT :
ExpBur :eeeeee:
Contact : aaaa
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