Protein Model on 4mds assembly_id=1
(TEMPLATE: 
4mds
assembly_id:1
)Protein Model on 4mds assembly_id=1
(TEMPLATE: 4mds
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [303 aa] | 3C-like proteinase :R1A_CVHSA | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [303 aa] | 3C-like proteinase :R1A_CVHSA | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 170G 172H 285A(T) 286L(I) 290E 298R 299Q 300C 301S (identity: 93.8 %/95.7 %) | |
| 3 | c | B 1 (A) | non-polymer(23H) | N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl)-N-[(1R)-2-[(2-methylbutan-2-yl)amino]-1-(1-methyl-1H-pyrrol-2-yl)-2-oxoethyl]acetamide | 41H 44C 45T 46S(A) 49M 140F 141L 142N 144S 145C 163H 164H 165M 166E 167L 168P 188R 189Q (identity: 94.4 %/95.7 %) | |
| 4 | d | B 2 (A) | non-polymer(23H) | N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl)-N-[(1R)-2-[(2-methylbutan-2-yl)amino]-1-(1-methyl-1H-pyrrol-2-yl)-2-oxoethyl]acetamide | ||
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 22C 23G 24T 25T 42V 43I 44C (identity: 100.0 %/95.7 %) | |
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 7 | g | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 40R 84N 85C (identity: 100.0 %/95.7 %) | |
| 8 | h | D 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4mds_A_1 identity=95.7% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:********************************** ********** ****************** ******************** * ***** ******:
4mds_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeeeeebebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :bb bbbbbbbb b eeee gceeccc c gg
Contact : e
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:********************************* ********************************************* ********************:
4mds_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeeeeb:
Contact : bbbbbb bbbbbc cc cccbcc b b cc
Contact : cc c
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:* **************************************************************** ***************** **************:
4mds_A_1 201:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHHT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeeebeebeebbeebebebeebbbbbbebbeeebeeeebeeeeebbbbbbbebbeebe:
Contact : bb b bbb
queryA 301:SGV: 303
:** :
4mds_A_1 301:SGA: 303
SecStr : :
ExpBur :eee:
Contact :b
|
[help]