#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 4yog assembly_id=1

Protein Model on 4yog assembly_id=1 (TEMPLATE: 4yog assembly_id:1 )

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description b(query A)
1 a A 1 (A) polymer(polypeptide(L)) [306 aa] 3C-like proteinase :R1AB_BCHK4 1S 2G 4R(V) 5K 6M 7A(S) 9P 10S 11G 14E 122P 123S(T) 124G 125V 126Y(F) 137K 138G 139S 140F 141L 166E 169T(N) 170G 172H 214N 283G 285A(S) 286L(T) 299Q 301S(M) (identity: 73.3 %/51.0 %)
2 b A(queryA) B 1 (B) polymer(polypeptide(L)) [306 aa] 3C-like proteinase :R1AB_BCHK4
3 c C 1 (A) non-polymer(ACT) ACETATE ION 12K(A) (identity: 0.0 %/51.0 %)
4 d D 1 (A) non-polymer(ACT) ACETATE ION
5 e E 1 (A) non-polymer(ACT) ACETATE ION
6 f F 1 (A) non-polymer(ACT) ACETATE ION
7 g G 1 (A) non-polymer(4F5) N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl)-N-[(1R)-2-(tert-butylamino)-2-oxo-1-(thiophen-3-yl)ethyl]acetamide 1S (identity: 100.0 %/51.0 %)
8 h H 1 (B) non-polymer(ACT) ACETATE ION 101Y (identity: 100.0 %/51.0 %)
9 i I 1 (B) non-polymer(ACT) ACETATE ION 11G 15G(N) (identity: 50.0 %/51.0 %)
10 j J 1 (B) non-polymer(ACT) ACETATE ION 131R 197D 198T(K) 199T(Y) (identity: 50.0 %/51.0 %)
11 k K 1 (B) non-polymer(4F5) N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl)-N-[(1R)-2-(tert-butylamino)-2-oxo-1-(thiophen-3-yl)ethyl]acetamide 25T(M) 41H 46S(A) 49M(L) 140F 141L 142N(C) 145C 163H 165M 166E 187D 188R(K) 189Q (identity: 64.3 %/51.0 %)
ALIGNMENTS
MODEL[2] Protein A "queryA" TEMPLATE:4yog_B_1 identity=51.0%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPK:  97
                :**  **  *** ** * ******  ********  * ****  *       ***  *** * ** * **        ***  ***    *** ** *** :
4yog_B_1       1:SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPS: 100
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  SGGGSS  HHHHHHH  GGGEEEEE SSS EEE EEEEEEETTEEEEEESS  TT:    
ExpBur          :eebeeeebebeebeebbbbbebeeeebbbbbbeebbbbbbbbbbeeeeeeebebeebbeeeeeeebebebeeeeeeebebeeeeebebbbebebeeebee:    
Contact         :aa aaaa aaac ai         k               k    k  k                                                   
Contact         :g         i                                                                                         

queryA        98:TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD: 197
                :** * *    **  ********* * **     * * ******* *******         * *** ***  * * *    *  ** * * ** *   **:
4yog_B_1     101:TPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTD: 200
SecStr          :  SEEE    TT EEEEEEEETTEEEEEEEEE  TTS B     GGGTT EEEEESSS EEEEEEEEEEEETTEEEEE TTS BGGG  SSSS       :    
ExpBur          :ebeeeeeebeebebbbbbbbeebeeeeeebbbbbebbbbeeebeebbbbbbbbeeeeeebbbbbbbbbeeeeebbbbbbbebebbeebebeeeeeeeeee:    
Contact         :   h                    aaaaa    j     aaaaak  k                 k ka  aa a              kkk       j
Contact         :                                          kk                        k                               

queryA       198:TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDV: 296
                :   * ** ******* **  **           *  *      *       *    *   **  *  * *     *  *  * ****   ******* **:
4yog_B_1     201:KYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV: 296
SecStr          : B HHHHHHHHHHHHTTT  TT  S    HHHHHHHHTTTTB      HHHHH---HHHHH   HHHHHHHHHH-HHH  TT  BTTBSS      HHHH:    
ExpBur          :eebbbbbbbbbbbbbbeebeebeeeeebeeeebbeebeeeebbebeeeebbee---bbeebebbbebbbbbbee-beeebeeeebeeeeebbbbbbbeeb:    
Contact         :jj              a                                                                     a aa          

queryA       297:VRQCSGVTFQ: 306
                :  *  **  *:
4yog_B_1     297:NMQVMGVVMQ: 306
SecStr          :HHTTTT    :    
ExpBur          :bebbeeeeee:    
Contact         :  a a                                                                                               


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