Protein Model on 4yoi assembly_id=1
(TEMPLATE: 
4yoi
assembly_id:1
)Protein Model on 4yoi assembly_id=1
(TEMPLATE: 4yoi
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_BCHK4 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_BCHK4 | 1S 2G 4R(V) 5K 6M 7A(S) 9P 10S 11G 14E 123S(T) 124G 125V 126Y(F) 137K 138G 139S 140F 141L 166E 169T(N) 170G 172H 214N 215G 283G 285A(S) 286L(T) 299Q 301S(M) (identity: 73.3 %/51.0 %) | |
| 3 | c | C 1 (A) | non-polymer(4F4) | N-{4-[(1H-benzotriazol-1-ylacetyl)(thiophen-3-ylmethyl)amino]phenyl}thiophene-2-carboxamide | 24T(S) 25T(M) 41H 44C 46S(A) 49M(L) 54Y 140F 141L 142N(C) 145C 163H 164H(Q) 165M 166E 187D 188R(K) 189Q (identity: 61.1 %/51.0 %) | |
| 4 | d | D 1 (A) | non-polymer(ACT) | ACETATE ION | 62S(T) 63N 64H (identity: 66.7 %/51.0 %) | |
| 5 | e | E 1 (A) | non-polymer(ACT) | ACETATE ION | 198T(K) 199T(Y) (identity: 0.0 %/51.0 %) | |
| 6 | f | F 1 (A) | non-polymer(FMT) | FORMIC ACID | 133N 135T 137K 171V(T) 194A(Q) 197D (identity: 66.7 %/51.0 %) | |
| 7 | g | G 1 (A) | non-polymer(FMT) | FORMIC ACID | 248D 249I(M) 255A(H) (identity: 33.3 %/51.0 %) | |
| 8 | h | H 1 (A) | non-polymer(FMT) | FORMIC ACID | 277N(Q) 278G (identity: 50.0 %/51.0 %) | |
| 9 | i | I 1 (B) | non-polymer(4F4) | N-{4-[(1H-benzotriazol-1-ylacetyl)(thiophen-3-ylmethyl)amino]phenyl}thiophene-2-carboxamide | ||
| 10 | j | J 1 (B) | non-polymer(FMT) | FORMIC ACID | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4yoi_A_1 identity=51.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPK: 97
:** ** *** ** * ****** ******** * **** * *** *** * ** * ** *** *** *** ** *** :
4yoi_A_1 1:SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPS: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGGS GGGSSS HHHHHHH GGGEEEEE SSS EEE EEEEEEETTEEEEEESS TT:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeeeeebebeebbeeeeeeebebebeeeeeeebebeeeeeeebbbebebeeebee:
Contact :bb bbbb bbb b cc c c c c c ddd
queryA 98:TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD: 197
:** * * ** ********* * ** * * ******* ******* * *** *** * * * * ** * * ** * **:
4yoi_A_1 101:TPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTD: 200
SecStr : SEEE TT EEEEEEEETTEEEEEEEEE TTS B GGGTT EEEEEETTEEEEEEEEEEEEETTEEEEE TTS BSSS SSSS :
ExpBur :ebeeeeeebeebebbbbbbbeebeeeeeebbbbbebbbbeeebeebbbbbbbbeeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeee:
Contact : bbbb f f bbbbbc c cccb bbfb ccc f f
Contact : f cc c
queryA 198:TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDV: 296
: * ** ******* ** ** * * * * * ** * * * * * * **** ******* **:
4yoi_A_1 201:KYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV: 296
SecStr : B HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHH---HHHHHT HHHHHHHHHH-HHH TT BTTBSS HHHH:
ExpBur :eebbebbbbbbbbbbbeebeebeeeeebeeeebbeebeeeebbebeeeeebee---bbeebebebeebbbbbee-beeebeeeebeeeeebbbbbbbeeb:
Contact :ee bb gg g hh b bb
queryA 297:VRQCSGVTFQ: 306
: * ** *:
4yoi_A_1 297:NMQVMGVVMQ: 306
SecStr :HHH :
ExpBur :eebbeeeeee:
Contact : b b
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