Protein Model on 5eu8 assembly_id=1
(TEMPLATE: 
5eu8
assembly_id:1
)Protein Model on 5eu8 assembly_id=1
(TEMPLATE: 5eu8
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [300 aa] | main protease :V9PIT1_9ALPC | 4R 5K 6M 7A 9P 10S 11G 14E 122P 123S(G) 124G(S) 125V 126Y 139S 141L(I) 169T(N) 170G 278G 284S(Y) 298R 299Q 302G (identity: 77.3 %/44.8 %) | |
| 2 | b | A(queryA) | A 2 (A) | polymer(polypeptide(L)) [300 aa] | main protease :V9PIT1_9ALPC | |
| 3 | c | B 1 (B) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | ||
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [6 aa] | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE | 25T(N) 26T(V) 27L 41H 47E(T) 54Y 140F 145C 163H 164H 165M(L) 166E 168P(G) 188R(Q) 189Q(P) 190T(S) 191A(M) (identity: 47.1 %/44.8 %) | |
| 5 | e | C 1 (A) | non-polymer(ZN) | ZINC ION | ||
| 6 | f | C 2 (A) | non-polymer(ZN) | ZINC ION | 41H 164H 187D (identity: 100.0 %/44.8 %) | |
| 7 | g | D 1 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | ||
| 8 | h | D 2 (A) | non-polymer(EDO) | 1,2-ETHANEDIOL | 180N(E) (identity: 0.0 %/44.8 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:5eu8_A_2 identity=44.8% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:** **** *** ** * * * * ****** * * ****** *** * *** * * * * *** ** ** :
5eu8_A_2 6:SGLRKMAQPSGVVEPCIVRVAYGNNVLNGLWLGDEVICPRHVIASDTSRV-INYENELSSVRLHNFSIAKNNAFLGVVSAKYKGVNLVLKVNQVNPNTPE: 104
SecStr : TTTGGGEEEEEETTEEEEEEEETTEEEEEGGGS S SSS - HHHHHHT GGGEEEEETTEEE EEE EETTEEEEEESS TT :
ExpBur :eebeeeeeebeebeebbbebbbeeebbbbbbbeeebbbbbbbbbeeeeee-bebeebeeeeeeeebebebeeeebebeeeebeebbbbbebeeebeeebe:
Contact : aaaa aaa a ddd d d d
Contact : f
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
: ** ** * **** * * ** ** ****** * ***** * **** ** * * * *** ** * * ** :
5eu8_A_2 105:HKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMS: 204
SecStr : EE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE SSS BGGG SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbeebbbeeebeebbebbbbbbeeeeebbbbbbbbeebeeebbbbbbbebebbeebebbeeeeebeeeeeb:
Contact : aaaaa ada d dddd daa h fdddd
Contact : f
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
: ** * **** *** *** ** * * * * * ** * * * ***** * ***** * ** :
5eu8_A_2 205:SDNVVAFLYAALINGERWFVTNTSMTLESYNAWAKTNSFTEIVS--TDAFNMLAAKTGYSVEKLLECIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM: 301
SecStr :HHHHHHHHHHHHHHT TT S HHHHHHHHHTTTB --SGGGHHHHHHHS HHHHHHHHHH-HTT TT BTTBSS HHHHHHHH:
ExpBur :bebbbbbbbbbbeeebeebebeeebebeebbebbeeeebeebee--eeebeebbeebeeebeebbbbbbe-beeebeeeebbeeeebbbbbbbebbeeeb:
Contact : a a aa
queryA 301:SGV: 303
: **:
5eu8_A_2 302:YGV: 304
SecStr :T :
ExpBur :eee:
Contact : a
|
[help]