Protein Model on 5nh0 assembly_id=1
(TEMPLATE: 
5nh0
assembly_id:1
)Protein Model on 5nh0 assembly_id=1
(TEMPLATE: 5nh0
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | c(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [299 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | 50L 53N(D) 56D(H) 168P(G) 190T(S) 191A(L) (identity: 16.7 %/45.2 %) | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [299 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | 169T(S) 193A(V) 195G(S) 196T(A) 197D(N) 198T(L) 235M 236K(A) 237Y(N) 238N(G) (identity: 10.0 %/45.2 %) | |
| 3 | c | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [300 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | |
| 4 | d | B 2 (B) | polymer(polypeptide(L)) [300 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | ||
| 5 | e | C 1 (C) | polymer(polypeptide(L)) [299 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | 1S 2G 4R(K) 5K 6M 7A 9P 10S 11G 14E 15G(R) 122P(A) 123S 124G 125V 126Y(F) 127Q(G) 137K 138G 139S 140F 141L(I) 166E 172H 285A(S) 286L(S) 290E 298R(K) 299Q 300C(M) 301S(Y) 302G (identity: 65.6 %/45.2 %) | |
| 6 | f | C 2 (C) | polymer(polypeptide(L)) [299 aa] | Replicase polyprotein 1ab :R1AB_CVHNL | 274N(E) (identity: 0.0 %/45.2 %) | |
| 7 | g | D 1 (A) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | ||
| 8 | h | D 2 (A) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | ||
| 9 | i | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 10 | j | E 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 11 | k | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 12 | l | F 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 13 | m | G 1 (B) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | 26T(V) 41H 47E(T) 140F 141L(I) 142N 143G 144S(A) 145C 163H 164H(Q) 165M(I) 166E 187D 188R(Q) 189Q(P) (identity: 50.0 %/45.2 %) | |
| 14 | n | G 2 (B) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | ||
| 15 | o | H 1 (C) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | ||
| 16 | p | H 2 (C) | non-polymer(8X8) | ~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate | ||
| 17 | q | I 1 (C) | non-polymer(GOL) | GLYCEROL | 118Y 123S (identity: 100.0 %/45.2 %) | |
| 18 | r | I 2 (C) | non-polymer(GOL) | GLYCEROL | ||
| 19 | s | J 1 (C) | non-polymer(GOL) | GLYCEROL | ||
| 20 | t | J 2 (C) | non-polymer(GOL) | GLYCEROL | ||
| 21 | u | K 1 (C) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 22 | v | K 2 (C) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[3] Protein A "queryA" TEMPLATE:5nh0_B_1 identity=45.2% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:** *** *** ** * * * * * *** ** * * ****** * * * *** * * * * * * ** ** * ***:
5nh0_B_1 1:SGLKKMAQPSGCVERCVVRVCYGSTVLNGVWLGDTVTCPRHVIAPSTTVL-IDYDHAYSTMRLHNFSVSHNGVFLGVVGVTMHGSVLRIKVSQSNVHTPK: 99
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG S SSS - HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebebeebebeebeebbbebbbeeeebbbbbbeebbbbbbbbbbeeeeee-bebeebeeebeeeebebbbeeeebeeeebeeeebbbebebeeebeeebe:
Contact :ee eeee eee ee m m m a a a
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYD-CVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
: * ** * **** * *** * ******** ** *** * * * * *** * ** * * * * * ** * * * :
5nh0_B_1 100:HVFKTLKPGDSFNILACYEGIASGVFGVNLRTNFTIKGSFINGACGSPGYNVRNDGTVEFCYLHQIELGSGAHVGSDFTGSVYGNFDDQPSLQVESANLM: 199
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEE TTS EEEEEEEEEE TTS EEEE TTS BGGG SSSS B:
ExpBur :eeeeebeeeeebbbbbbeebeeeeeebbbbeebebbeeebeeebbbbbbbbeeeeebbbbbbbbbbebeeebbbbbbbebebbeebebbeeeeebeeeee:
Contact : q eeeeee eeeeemmmm mmme ab e mmmaa b bbbb
Contact : q mm m
queryA 200:ITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQ: 299
: ** * **** ** ** * ** ** * * * * ** * ** * * * *** * **** ** *:
5nh0_B_1 200:LSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSS--VECYSILAAKTGVSVEQLLASIQH-LHEGFGGKNILGYSSLCDEFTLAEVVKQ: 296
SecStr : HHHHHHHHHHHHHTT TT S HHHHHHHHHHHTB --GGGGHHHHHHHS HHHHHHHHHH-HTT TT BTTBSS HHHHHHH:
ExpBur :bbebbbbbbbbbbeeebeebbbeeebebeebbebbeeeebbebee--eeebeebeeebebebebbbbbbee-beeebeeeebeeeeebbbebbeebbeee:
Contact : bbbb f ee e ee
queryA 300:CSGV: 303
: **:
5nh0_B_1 297:MYGV: 300
SecStr :HH :
ExpBur :beee:
Contact :eee
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