Protein Model on 5rf6 assembly_id=1
(TEMPLATE: 
5rf6
assembly_id:1
)Protein Model on 5rf6 assembly_id=1
(TEMPLATE: 5rf6
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [304 aa] | 3C-like proteinase :R1AB_SARS2 | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [304 aa] | 3C-like proteinase :R1AB_SARS2 | 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 172H 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T (identity: 100.0 %/100.0 %) | |
| 3 | c | B 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 14E 15G 17M 97K (identity: 100.0 %/100.0 %) | |
| 8 | h | D 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 9 | i | E 1 (A) | non-polymer(NTG) | 5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile | 25T 41H 44C 45T 46S 49M 164H 165M 166E (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (A) | non-polymer(NTG) | 5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile | ||
| 11 | k | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 140F 141L 144S 145C 163H 165M 166E 172H (identity: 100.0 %/100.0 %) | |
| 12 | l | F 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5rf6_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
5rf6_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeebeebebeeebeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :bbbbbbbbbbb bg g i i iii i ccc g
Contact : eee g
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
5rf6_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : b bbbbbbb bbbbb kk kiib b
Contact : f e kk ki k
Contact : k
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
5rf6_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbebeeeebeeeeebebeebeebbeeeebeebeeeebeebeebbeeeebebeebbbbbbebbeeebeeeebeebeebebbbbbebbeeee:
Contact : b bb b ebb
queryA 301:SGVT: 304
:****:
5rf6_A_1 301:SGVT: 304
SecStr :HT :
ExpBur :eeee:
Contact :bbbb
|
[help]