Protein Model on 5rh6 assembly_id=1
(TEMPLATE: 
5rh6
assembly_id:1
)Protein Model on 5rh6 assembly_id=1
(TEMPLATE: 5rh6
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [304 aa] | 3C-like proteinase :R1AB_SARS2 | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [304 aa] | 3C-like proteinase :R1AB_SARS2 | 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 170G 172H 280T 283G 285A 286L 290E 299Q 300C 301S 302G 303V 304T (identity: 100.0 %/100.0 %) | |
| 3 | c | B 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 14E 15G 17M 97K (identity: 100.0 %/100.0 %) | |
| 8 | h | D 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 9 | i | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 132P 133N 196T 198T 240E (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 11 | k | F 1 (A) | non-polymer(UHY) | N-[(1R)-2-[(2-ethyl-6-methylphenyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]-N-[6-(propan-2-yl)pyridin-3-yl]propanamide | 41H 49M 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E 168P 188R 189Q (identity: 100.0 %/100.0 %) | |
| 12 | l | F 2 (A) | non-polymer(UHY) | N-[(1R)-2-[(2-ethyl-6-methylphenyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]-N-[6-(propan-2-yl)pyridin-3-yl]propanamide | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5rh6_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
5rh6_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG GGGTTS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeeeeebebeeebeeeeeeebebebeeeebebeeeebeebbbebebeeebeeebe:
Contact :bbbbbbbbbbb bg g k k ccc g
Contact : eee g
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
5rh6_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeebeb:
Contact : b bbbbbbbb ii bbbbbkkkk kkkb k b b kk i i
Contact : f e kk k
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
5rh6_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebebeebeebbeeeebeebeeeebeebeebbeeeebebeebbbbbbebbeeebeeeebeebeebebbbbbebbeeee:
Contact : i b b bb b ebb
queryA 301:SGVT: 304
:****:
5rh6_A_1 301:SGVT: 304
SecStr :HT :
ExpBur :eeee:
Contact :bbbb
|
[help]