Protein Model on 6ynq assembly_id=1
(TEMPLATE: 
6ynq
assembly_id:1
)Protein Model on 6ynq assembly_id=1
(TEMPLATE: 6ynq
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [306 aa] | Replicase polyprotein 1ab :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 170G 172H 283G 285A 286L 290E 298R 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | A 2 (A) | polymer(polypeptide(L)) [306 aa] | Replicase polyprotein 1ab :R1AB_SARS2 | |
| 3 | c | B 1 (A) | non-polymer(P6N) | (2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-one | 1S (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (A) | non-polymer(P6N) | (2~{S})-2-methyl-3,4-dihydro-2~{H}-naphthalen-1-one | 140F 141L 142N 144S 145C 163H 164H 166E (identity: 100.0 %/100.0 %) | |
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 75L 76R (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (A) | non-polymer(CL) | CHLORIDE ION | 5K (identity: 100.0 %/100.0 %) | |
| 8 | h | D 2 (A) | non-polymer(CL) | CHLORIDE ION | 5K (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:6ynq_A_2 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
6ynq_A_2 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeebbebeebeebbbebbbeeebbbbbbbeebbbbbbbbbbeeebbeebebeeebeebeeeebebebeeeebebeeeebeebbbebebeeebeeebe:
Contact :aa aaaaaaaa a ff
Contact :c g
Contact : h
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
6ynq_A_2 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeebbbbbbbbbbeeebbbbbbbbbbebeeeebbbbbbebebbeebebeeeebeeeeeebb:
Contact : a aaaaaaa aaaaad dd dd a a a
Contact : dd d
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
6ynq_A_2 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbebeeeebeeeeebebeebbebbeeeebeebeeebbeebeebbeebebebeebbbbbbbbbeeebeeeebbebeebbbbbbbebbebbe:
Contact : a aa a aaa
queryA 301:SGVTFQ: 306
:******:
6ynq_A_2 301:SGVTFQ: 306
SecStr :HT :
ExpBur :eeeebe:
Contact :aaaaa
|
[help]