Protein Model on 6yvf assembly_id=1
(TEMPLATE: 
6yvf
assembly_id:1
)Protein Model on 6yvf assembly_id=1
(TEMPLATE: 6yvf
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [306 aa] | Replicase polyprotein 1ab :R1AB_SARS2 | |
| 2 | b | A 2 (A) | polymer(polypeptide(L)) [306 aa] | Replicase polyprotein 1ab :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 137K 138G 139S 140F 141L 166E 170G 172H 280T 283G 285A 286L 290E 298R 299Q 300C 301S 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 3 | c | B 1 (A) | non-polymer(A82) | 2-[[(1R)-1-(7-methyl-2-morpholin-4-yl-4-oxidanylidene-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid | 63N 78I 79G 80H 81S 88K 90K (identity: 100.0 %/100.0 %) | |
| 4 | d | B 2 (A) | non-polymer(A82) | 2-[[(1R)-1-(7-methyl-2-morpholin-4-yl-4-oxidanylidene-pyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoic acid | ||
| 5 | e | C 1 (A) | non-polymer(CL) | CHLORIDE ION | 15G 31W 95N 96P 97K (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (A) | non-polymer(CL) | CHLORIDE ION | ||
| 7 | g | D 1 (A) | non-polymer(CL) | CHLORIDE ION | 14E (identity: 100.0 %/100.0 %) | |
| 8 | h | D 2 (A) | non-polymer(CL) | CHLORIDE ION | 9P 10S 11G 12K (identity: 100.0 %/100.0 %) | |
| 9 | i | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 11 | k | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 15G 17M 97K (identity: 100.0 %/100.0 %) | |
| 12 | l | F 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 13 | m | G 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 140F 141L 142N 144S 163H 165M 166E (identity: 100.0 %/100.0 %) | |
| 14 | n | G 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 1S (identity: 100.0 %/100.0 %) | |
| 15 | o | H 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 101Y 103F (identity: 100.0 %/100.0 %) | |
| 16 | p | H 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 17 | q | I 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 23G 64H 65N 67L (identity: 100.0 %/100.0 %) | |
| 18 | r | I 2 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 19 | s | J 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 61K 62S (identity: 100.0 %/100.0 %) | |
| 20 | t | J 2 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 21 | u | K 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 238N (identity: 100.0 %/100.0 %) | |
| 22 | v | K 2 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 23 | w | L 1 (A) | non-polymer(CA) | CALCIUM ION | 100K (identity: 100.0 %/100.0 %) | |
| 24 | x | L 2 (A) | non-polymer(CA) | CALCIUM ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6yvf_A_1 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
6yvf_A_1 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTTTTS HHHHHHT GGGEEEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbebbbeeeebbbbbbeeebbbbbbbbbeeebbeebebeeebeeeeeeebebebeeeebebebeeeeebbbebebeeebeeebe:
Contact :bb bbbbbbbbh be k q e sscqq q iii cccc c c eee w
Contact :n hhh gk k
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
6yvf_A_1 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SS SS B :
ExpBur :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbebeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeeeeb:
Contact :o o b bbbbbbb bbbbbm m m mb b b
Contact : mm m
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
6yvf_A_1 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHTTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebeeeebbebbeeeebbebeeebbeebeebbeebebebeebbbbbbebbeeebeeeebeebeebebbbbbebbebbe:
Contact : u b b bb b bbb
queryA 301:SGVTFQ: 306
:******:
6yvf_A_1 301:SGVTFQ: 306
SecStr :HT :
ExpBur :eeeeee:
Contact :bbbbb
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