Protein Model on 6z2e assembly_id=1
(TEMPLATE: 
6z2e
assembly_id:1
)Protein Model on 6z2e assembly_id=1
(TEMPLATE: 6z2e
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (AAA) | polymer(polypeptide(L)) [306 aa] | Main Protease :R1AB_SARS2 | 1S 2G 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 119N 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 142N 166E 170G 172H 283G 285A 286L 290E 298R 299Q 300C 301S 303V 304T 305F 306Q (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | A 2 (AAA) | polymer(polypeptide(L)) [306 aa] | Main Protease :R1AB_SARS2 | |
| 3 | c | B 1 (AAA) | non-polymer(Q5T) | (4~{S})-4-[[(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-[3-[2-[2-[2-[2-[5-[(3~{a}~{S},4~{R},6~{a}~{R})-2-oxidanylidene-3,3~{a},4,6~{a}-tetrahydro-1~{H}-thieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]propanoylamino]butanoyl]amino]-3,3-dimethyl-butanoyl]amino]-4-methyl-pentanoyl]amino]-6-methylsulfonyl-hexanamide | ||
| 4 | d | B 2 (AAA) | non-polymer(Q5T) | (4~{S})-4-[[(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-[3-[2-[2-[2-[2-[5-[(3~{a}~{S},4~{R},6~{a}~{R})-2-oxidanylidene-3,3~{a},4,6~{a}-tetrahydro-1~{H}-thieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]propanoylamino]butanoyl]amino]-3,3-dimethyl-butanoyl]amino]-4-methyl-pentanoyl]amino]-6-methylsulfonyl-hexanamide | 25T 26T 27L 41H 51N 140F 141L 142N 143G 144S 145C 163H 164H 165M 166E 172H 188R 189Q 190T 191A 192Q (identity: 100.0 %/100.0 %) | |
| 5 | e | C 1 (AAA) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 6 | f | C 2 (AAA) | non-polymer(CL) | CHLORIDE ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (AAA) | non-polymer(CL) | CHLORIDE ION | ||
| 8 | h | D 2 (AAA) | non-polymer(CL) | CHLORIDE ION | 200I 201T 202V 240E 246H (identity: 100.0 %/100.0 %) | |
| 9 | i | E 1 (AAA) | non-polymer(NA) | SODIUM ION | ||
| 10 | j | E 2 (AAA) | non-polymer(NA) | SODIUM ION | 241P 242L 243T 246H (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:6z2e_A_2 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
6z2e_A_2 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEE SS EEEEEEETTEEEEEGGGGS GGG SS HHHHHHT GGG EEEETTEEE EEEEEEETTEEEEEESS TT E:
ExpBur :eebeeeebebeebeebbbbbebeebebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :aa aaaaaaaa a ddd d d
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
6z2e_A_2 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeebbbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeeeeeb:
Contact : aa aaaaaaaa aaaaaaddd ddda a a ddddd h
Contact : ddd d d
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
6z2e_A_2 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebebeebbebbeeeebeebeeeebeebeebbeebebebeebbbbbbebbeeebeeeebeebeebebbbbbebbebbe:
Contact :hh hjjj h aeaa a aaa
Contact : j fee
Contact : ff
queryA 301:SGVTFQ: 306
:******:
6z2e_A_2 301:SGVTFQ: 306
SecStr :TGGGG :
ExpBur :eeeeee:
Contact :a aaaa
|
[help]