Protein Model on 7jyc assembly_id=1
(TEMPLATE: 
7jyc
assembly_id:1
)Protein Model on 7jyc assembly_id=1
(TEMPLATE: 7jyc
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_SARS2 | 1S 2G 3F 4R 5K 6M 7A 8F 9P 10S 11G 14E 118Y 121S 122P 123S 124G 125V 126Y 127Q 128C 137K 138G 139S 140F 141L 166E 172H 280T 283G 285A 286L 299Q 302G 303V 304T 305F (identity: 100.0 %/100.0 %) | |
| 2 | b | A(queryA) | A 2 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_SARS2 | |
| 3 | c | B 1 (A) | non-polymer(NNA) | (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropyla mino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide | ||
| 4 | d | B 2 (A) | non-polymer(NNA) | (1R,2S,5S)-3-[N-({1-[(tert-butylsulfonyl)methyl]cyclohexyl}carbamoyl)-3-methyl-L-valyl]-N-{(1S)-1-[(1R)-2-(cyclopropyla mino)-1-hydroxy-2-oxoethyl]pentyl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide | 25T 26T 41H 49M 54Y 140F 141L 142N 143G 144S 145C 164H 165M 166E 167L 168P 186V 187D 188R 189Q 190T 191A 192Q (identity: 100.0 %/100.0 %) | |
| 5 | e | C 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 6 | f | C 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 74Q 75L 76R (identity: 100.0 %/100.0 %) | |
| 7 | g | D 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 8 | h | D 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 64H 65N (identity: 100.0 %/100.0 %) | |
| 9 | i | E 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 123S (identity: 100.0 %/100.0 %) | |
| 10 | j | E 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 6M 7A 8F 127Q 298R (identity: 100.0 %/100.0 %) | |
| 11 | k | F 1 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | ||
| 12 | l | F 2 (A) | non-polymer(DMS) | DIMETHYL SULFOXIDE | 14E 15G 17M 70A 97K (identity: 100.0 %/100.0 %) | |
| 13 | m | G 1 (A) | non-polymer(NA) | SODIUM ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| 14 | n | G 2 (A) | non-polymer(NA) | SODIUM ION | 284S 285A 286L (identity: 100.0 %/100.0 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:7jyc_A_2 identity=100.0% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:****************************************************************************************************:
7jyc_A_2 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG TTGGGS HHHHHTT GGG EEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbbbbbeeeebeebebeebbeebeeeebebebeeeebebeeeeeeebbbebebeeebeeebe:
Contact :aaaaaaaaaaa al l dd d d d hh l fff l
Contact : jjj l
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
:****************************************************************************************************:
7jyc_A_2 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr :EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeeeeeeeeebb:
Contact : a aaaaaaaa aaaaadddd ddadd a ddddddd
Contact : i j dd d
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
:****************************************************************************************************:
7jyc_A_2 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHHTTB HHHHHHTHHHHHHHT HHHHHHHHHHHHHH TT BTTBSS HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeeeeebeeeeebebeebbebbeeeebeebeeebbeebeebeeeeebebeebbbbbbebbeeebeeeebeeeeebebbbbbebbeeee:
Contact : a amaa ja
Contact : nmm
Contact : nn
queryA 301:SGVTFQ: 306
:******:
7jyc_A_2 301:SGVTFQ: 306
SecStr :H :
ExpBur :eeeeee:
Contact : aaaa
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