Protein Model on 1lvo assembly_id=2
(TEMPLATE: 
1lvo
assembly_id:2
)Protein Model on 1lvo assembly_id=2
(TEMPLATE: 1lvo
assembly_id:2
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [300 aa] | Replicase, hydrolase domain :R1AB_CVPPU | |
| 2 | b | D 1 (D) | polymer(polypeptide(L)) [301 aa] | Replicase, hydrolase domain :R1AB_CVPPU | 1S 2G 4R 6M 7A 8F(Q) 9P 10S 11G 14E 122P 123S(G) 124G(S) 125V 126Y 137K 138G 139S 141L(I) 278G 280T 283G(S) 284S(Y) 285A(G) 299Q 300C(M) 301S(Y) 302G (identity: 67.9 %/45.2 %) | |
| 3 | c | V 1 (C) | non-polymer(SO4) | SULFATE ION | 176D(N) 180N(E) (identity: 0.0 %/45.2 %) | |
| 4 | d | W 1 (C) | non-polymer(SO4) | SULFATE ION | 131R 197D(N) (identity: 50.0 %/45.2 %) | |
| 5 | e | X 1 (C) | non-polymer(SO4) | SULFATE ION | 169T(N) 193A(L) 194A(E) 195G (identity: 25.0 %/45.2 %) | |
| 6 | f | Y 1 (C) | non-polymer(SO4) | SULFATE ION | 279R 280T (identity: 100.0 %/45.2 %) | |
| 7 | g | Z 1 (C) | non-polymer(SO4) | SULFATE ION | 215G 216D(E) 217R 218W 279R (identity: 80.0 %/45.2 %) | |
| 8 | h | AA 1 (C) | non-polymer(DIO) | 1,4-DIETHYLENE DIOXIDE | 224T(S) 225T(M) 226T(S) 229D(S) (identity: 0.0 %/45.2 %) | |
| 9 | i | BA 1 (C) | non-polymer(DIO) | 1,4-DIETHYLENE DIOXIDE | 137K (identity: 100.0 %/45.2 %) | |
| 10 | j | CA 1 (C) | non-polymer(MRD) | (4R)-2-METHYLPENTANE-2,4-DIOL | 41H 47E(T) 52P(I) 54Y 164H 165M(L) 187D 189Q(P) (identity: 50.0 %/45.2 %) | |
| 11 | k | DA 1 (D) | non-polymer(SO4) | SULFATE ION | ||
| 12 | l | EA 1 (D) | non-polymer(SO4) | SULFATE ION | ||
| 13 | m | FA 1 (D) | non-polymer(SO4) | SULFATE ION | ||
| 14 | n | GA 1 (D) | non-polymer(SO4) | SULFATE ION | ||
| 15 | o | HA 1 (D) | non-polymer(SO4) | SULFATE ION | 6M 298R (identity: 100.0 %/45.2 %) | |
| 16 | p | IA 1 (D) | non-polymer(MRD) | (4R)-2-METHYLPENTANE-2,4-DIOL | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:1lvo_C_1 identity=45.2% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:** **** *** ** * * * * ****** * * ****** *** *** * ** * * * *** ** ** :
1lvo_C_1 1:SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPE: 99
SecStr : TTTGGGEEEEEETTEEEEEEEETTEEEEEGGGG S SS - HHHHHHT GGG EEEETTEEE EEEEEEETTEEEEEESS TT S:
ExpBur :eebeeeeeebeebeebbbebbbeeeebbbbbbeeebbbbbbbbbeeeeee-bebeeeeeebeeeebebbeeeeebeeeebeeeebbbbbebeeebeeebe:
Contact :bb b bbbbbb b j j j j
Contact : o
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
: ** * * * **** * * ** ** ****** * ***** * **** ** * * * ** ** * * ** :
1lvo_C_1 100:HKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMS: 199
SecStr : EE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG SSS S B :
ExpBur :eeeeebeebeebbbbbbeebeeeeeebbbbbeebbbebebeeebebbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebbeeebebeebebb:
Contact : bbbbb d bbb b jj e c c j j eee d
Contact : i
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
: ** * **** *** *** * * * * * * * ** * * * * ***** * ***** * ** :
1lvo_C_1 200:SDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM: 296
SecStr :HHHHHHHHHHHHHTT TT S HHHHHHHHHTTTB --SGGGHHHHHHHT HHHHHHHHHH-HHH TT BTTBSS S HHHHHHHH:
ExpBur :bebbbbbbbbbbeeeeeebbeeeebeeeebbebbeeeebeebee--eeebeebbeeeebebebbbbbbee-beeebeeeebbeeeebbbebbbebbbeeb:
Contact : gggg hhh h bfb bbb obb
Contact : gf
queryA 301:SGV: 303
: **:
1lvo_C_1 297:YGV: 299
SecStr :T :
ExpBur :eee:
Contact :bb
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