Protein Model on 4wmd assembly_id=2
(TEMPLATE: 
4wmd
assembly_id:2
)Protein Model on 4wmd assembly_id=2
(TEMPLATE: 4wmd
assembly_id:2
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [303 aa] | ORF1a :W6A941_9BETC | |
| 2 | b | C 2 (C) | polymer(polypeptide(L)) [303 aa] | ORF1a :W6A941_9BETC | 1S 2G 4R(V) 5K 6M 7A(S) 8F(H) 9P 10S 11G 14E 122P 123S(T) 124G 125V(T) 126Y(F) 137K 138G 139S 140F 141L 166E 169T(N) 170G 172H 214N 283G 284S 285A(T) 286L(M) 298R(M) 299Q 300C(I) 302G (identity: 67.6 %/51.8 %) | |
| 3 | c | H 1 (C) | non-polymer(1PE) | PENTAETHYLENE GLYCOL | 6M 7A(S) 8F(H) 113S 298R(M) 302G (identity: 50.0 %/51.8 %) | |
| 4 | d | H 2 (C) | non-polymer(1PE) | PENTAETHYLENE GLYCOL | 118Y 123S(T) (identity: 50.0 %/51.8 %) | |
| 5 | e | I 1 (C) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 197D 198T(K) 199T(Y) 238N(Q) (identity: 25.0 %/51.8 %) | |
| 6 | f | I 2 (C) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 7 | g | J 1 (C) | non-polymer(PGE) | TRIETHYLENE GLYCOL | 41H 140F 141L 142N(C) 144S 163H 164H(Q) 165M 166E 189Q (identity: 80.0 %/51.8 %) | |
| 8 | h | J 2 (C) | non-polymer(PGE) | TRIETHYLENE GLYCOL | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4wmd_C_1 identity=51.8% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPK: 97
:** ** *** ** ******** ******** * ***** * *** *** ** * ** *** ** ** *** ** *** :
4wmd_C_1 1:SGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPS: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGGS TTTTTS HHHHHHT GGGEEEE SSS EE EEEEEEETTEEEEEESS TT:
ExpBur :eebeeeeeebeebeebbbbbebeebebbbbbbeebbbbbbbbbbeeeebeebebeebeeebeeeebebebeeeeeeebebebeeeeebbbebebeeebee:
Contact :bb bbbbbbbb b g
Contact : ccc
queryA 98:TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD: 197
:** * * ** ********* * * **** ******* ** **** ***** *** * * * * ** * * * * **:
4wmd_C_1 101:TPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSAGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTD: 200
SecStr : SEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEEEETTEEEEE TTS BGGG SSSS :
ExpBur :ebeeeeeebeebeebbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbeeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeee:
Contact : c d bbbbb bbbbbg g gggb bb b g e
Contact : d gg g
queryA 198:TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDV: 296
: *** ****** ** ** * ** * * ** * ** * * * * **** ******* **:
4wmd_C_1 201:KYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDV: 296
SecStr : B HHHHHHHHHHHHHTT TT S HHHHHHHHHTTTB HHHHH---HHHHHT HHHHHHHHHHHH-H TT BTTBSS HHHH:
ExpBur :eebbebbbbbbbbbbeeebeebeeeeebeeeebbeebeeeebeebeeeebbee---bbeebebbbebbbebbbebe-eebeeeebeebeebebbbbbebb:
Contact :ee b e bbbb
queryA 297:VRQCSGV: 303
: * **:
4wmd_C_1 297:NMQIMGV: 303
SecStr :HHHHH :
ExpBur :bebeeee:
Contact : bbb b
Contact : c c
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