Protein Model on 4wmf assembly_id=2
(TEMPLATE: 
4wmf
assembly_id:2
)Protein Model on 4wmf assembly_id=2
(TEMPLATE: 4wmf
assembly_id:2
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [304 aa] | MERS-CoV 3CL protease :W6A941_9BETC | 1S 2G 4R(V) 5K 6M 7A(S) 8F(H) 9P 10S 11G 14E 122P 123S(T) 124G 125V(T) 126Y(F) 137K 138G 139S 140F 141L 166E 169T(N) 170G 172H 214N 283G 284S 285A(T) 286L(M) 299Q 300C(I) 301S(M) (identity: 66.7 %/51.8 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [303 aa] | MERS-CoV 3CL protease :W6A941_9BETC | |
| 3 | c | C 1 (C) | polymer(polypeptide(L)) [289 aa] | MERS-CoV 3CL protease :W6A941_9BETC | ||
| 4 | d | D 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 5 | e | E 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 6 | f | F 1 (A) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 7 | g | G 1 (B) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | 41H 49M(L) 140F 141L 142N(C) 144S 163H 164H(Q) 165M 166E 188R(K) 189Q (identity: 66.7 %/51.8 %) | |
| 8 | h | H 1 (B) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | 118Y 123S(T) (identity: 50.0 %/51.8 %) | |
| 9 | i | I 1 (B) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 131R 197D 198T(K) 199T(Y) 238N(Q) (identity: 40.0 %/51.8 %) | |
| 10 | j | J 1 (B) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | 101Y 102K(T) 103F (identity: 66.7 %/51.8 %) | |
| 11 | k | K 1 (B) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | 166E 167L 189Q 190T(V) 191A(H) (identity: 60.0 %/51.8 %) | |
| 12 | l | L 1 (B) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | 6M 7A(S) 8F(H) 298R(M) (identity: 25.0 %/51.8 %) | |
| 13 | m | M 1 (C) | non-polymer(PEG) | DI(HYDROXYETHYL)ETHER | ||
| 14 | n | N 1 (C) | non-polymer(PG4) | TETRAETHYLENE GLYCOL | ||
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:4wmf_B_1 identity=51.8% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPK: 97
:** ** *** ** ******** ******** * ***** * *** *** ** * ** *** ** ** *** ** *** :
4wmf_B_1 1:SGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRVVGHAMQGTLLKLTVDVANPS: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGGS GGGTTS HHHHHHT GGGEEEEE SSS EEE EEEEEEETTEEEEEESS TT:
ExpBur :eebeeeeeebeebeebbbbbebeebebbbbbbeebbbbbbbbbbeeeeeeebebeebeeebeeeebebebeeeeeeebebebeeeeebbbebebeeebee:
Contact :aa aaaaaaaa a g g
Contact : lll
queryA 98:TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD: 197
:** * * ** ********* * * **** ******* ** **** ***** *** * * * * ** * * * * **:
4wmf_B_1 101:TPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSAGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTD: 200
SecStr : SEEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEEEETTEEEEE TTS BGGG SSSS :
ExpBur :ebeeeeeebeebeebbbbbbeebeeeeeebbbbbbbebbeeebeeebbbbbbbeeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeee:
Contact : jjj h aaaaa i aaaaag g gggak aa a ggkk i
Contact : h gg g k
Contact : k
queryA 198:TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDV: 296
: *** ****** ** ** * ** * * ** * ** * * * * **** ******* **:
4wmf_B_1 201:KYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPEDV: 296
SecStr : B HHHHHHHHHHHHHTT TT S HHHHHHHHHTTTB HHHHH---HHHHHT HHHHHHHHHHHH-H TT BTTBSS HHHH:
ExpBur :eebbebbbbbbbbbbeeebeebeeeeebeeeebbeebeeeebbebeeeeebee---bbeeeebbbebbbebbbebe-eebeeeebeebeebebbbbbebb:
Contact :ii a i aaaa
queryA 297:VRQCSGV: 303
: * **:
4wmf_B_1 297:NMQIMGV: 303
SecStr :HHHHS :
ExpBur :bebebee:
Contact : laaa
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