Protein Model on 1lvo assembly_id=3
(TEMPLATE: 
1lvo
assembly_id:3
)Protein Model on 1lvo assembly_id=3
(TEMPLATE: 1lvo
assembly_id:3
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | E 1 (E) | polymer(polypeptide(L)) [299 aa] | Replicase, hydrolase domain :R1AB_CVPPU | 1S 2G 4R 5K 6M 7A 8F(Q) 9P 10S 11G 14E 115L 118Y 122P 123S(G) 124G(S) 125V 126Y 127Q(G) 128C(V) 137K 138G 139S 141L(I) 170G 278G 283G(S) 284S(Y) 285A(G) 290E 299Q 300C(M) 302G (identity: 69.7 %/45.2 %) | |
| 2 | b | A(queryA) | F 1 (F) | polymer(polypeptide(L)) [299 aa] | Replicase, hydrolase domain :R1AB_CVPPU | |
| 3 | c | JA 1 (E) | non-polymer(SO4) | SULFATE ION | ||
| 4 | d | KA 1 (E) | non-polymer(SO4) | SULFATE ION | ||
| 5 | e | LA 1 (E) | non-polymer(SO4) | SULFATE ION | ||
| 6 | f | MA 1 (E) | non-polymer(SO4) | SULFATE ION | ||
| 7 | g | NA 1 (E) | non-polymer(DIO) | 1,4-DIETHYLENE DIOXIDE | ||
| 8 | h | OA 1 (E) | non-polymer(DIO) | 1,4-DIETHYLENE DIOXIDE | 6M 298R (identity: 100.0 %/45.2 %) | |
| 9 | i | PA 1 (E) | non-polymer(MRD) | (4R)-2-METHYLPENTANE-2,4-DIOL | ||
| 10 | j | QA 1 (F) | non-polymer(SO4) | SULFATE ION | 169T(N) 193A(L) 194A(E) 195G (identity: 25.0 %/45.2 %) | |
| 11 | k | RA 1 (F) | non-polymer(SO4) | SULFATE ION | 217R 218W (identity: 100.0 %/45.2 %) | |
| 12 | l | SA 1 (F) | non-polymer(SO4) | SULFATE ION | 62S(R) 63N(L) 64H (identity: 33.3 %/45.2 %) | |
| 13 | m | TA 1 (F) | non-polymer(SO4) | SULFATE ION | 131R 137K 197D(N) (identity: 66.7 %/45.2 %) | |
| 14 | n | UA 1 (F) | non-polymer(DIO) | 1,4-DIETHYLENE DIOXIDE | 218W 278G 279R 280T (identity: 100.0 %/45.2 %) | |
| 15 | o | VA 1 (F) | non-polymer(MRD) | (4R)-2-METHYLPENTANE-2,4-DIOL | 41H 47E(T) 52P(I) 164H 165M(L) 187D 188R(Q) 189Q(P) (identity: 37.5 %/45.2 %) | |
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:1lvo_F_1 identity=45.2% |
queryA 1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
:** **** *** ** * * * * ****** * * ****** *** *** * ** * * * *** ** ** :
1lvo_F_1 1:SGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRV-INYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPE: 99
SecStr : TTTGGGEEEEEETTEEEEEEEETTEEEEEGGGG S TTS - HHHHHHT GGG EEEETTEEE EEEEEEETTEEEEEESS TT :
ExpBur :eebeeeeeebeebeebbbebbbeeeebbbbbbeeebbbbbbbbbeeeeee-bebeebbeebeeeebbbbbeeeebebeebeeeebbbbbebeeebeeebe:
Contact :aa aaaaaaaa a o o o lll
Contact : h
queryA 101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
: ** * * * **** * * ** ** ****** * ***** * **** ** * * * ** ** * * ** :
1lvo_F_1 100:HKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMS: 199
SecStr : EE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG SSSS B :
ExpBur :eeeeebeebebbbbbbbeebeeeeeebbbbbeebbbeeebeebbebbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebbeeeeebeeeeeb:
Contact : a a aaaaaaa m aaa a oo ja ooo jjj m
Contact : m
queryA 201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
: ** * **** *** *** * * * * * * * ** * * * * ***** * ***** * ** :
1lvo_F_1 200:SDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSS--TDAFSMLAAKTGQSVEKLLDSIVR-LNKGFGGRTILSYGSLCDEFTPTEVIRQM: 296
SecStr :HHHHHHHHHHHHTTT TT SHHHHHHHHTSSB --SGGGHHHHHHHT HHHHHHHHHT-TSS TT BTTBSS S HHHHHHHH:
ExpBur :bbbbbbbbbbbbeeebeebebeeebebeebbeebeeeebeebee--eeebeebbeeeeeebebbbbbbee-beeebeeeebbeeeebbbebbbebbbeee:
Contact : kk ann aaa a haa
Contact : n n
queryA 301:SGV: 303
: **:
1lvo_F_1 297:YGV: 299
SecStr :S :
ExpBur :eee:
Contact : a
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