Protein Model on 4yoi assembly_id=1
(TEMPLATE: 
4yoi
assembly_id:1
)Protein Model on 4yoi assembly_id=1
(TEMPLATE: 4yoi
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | b(query A) |
| 1 | a | A 1 (A) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_BCHK4 | 3264S 3265G 3267R(V) 3268K 3269M 3270A(S) 3272P 3273S 3274G 3277E 3385P 3386S(T) 3387G 3388V 3389Y(F) 3400K 3401G 3402S 3403F 3404L 3429E 3432T(N) 3433G 3435H 3477N 3546G 3548A(S) 3549L(T) 3562Q 3564S(M) (identity: 73.3 %/51.0 %) | |
| 2 | b | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [306 aa] | 3C-like proteinase :R1AB_BCHK4 | |
| 3 | c | C 1 (A) | non-polymer(4F4) | N-{4-[(1H-benzotriazol-1-ylacetyl)(thiophen-3-ylmethyl)amino]phenyl}thiophene-2-carboxamide | ||
| 4 | d | D 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 5 | e | E 1 (A) | non-polymer(ACT) | ACETATE ION | ||
| 6 | f | F 1 (A) | non-polymer(FMT) | FORMIC ACID | ||
| 7 | g | G 1 (A) | non-polymer(FMT) | FORMIC ACID | ||
| 8 | h | H 1 (A) | non-polymer(FMT) | FORMIC ACID | ||
| 9 | i | I 1 (B) | non-polymer(4F4) | N-{4-[(1H-benzotriazol-1-ylacetyl)(thiophen-3-ylmethyl)amino]phenyl}thiophene-2-carboxamide | 3287T(S) 3288T(M) 3304H 3307C 3309S(A) 3312M(L) 3317Y 3403F 3404L 3405N(C) 3407S 3408C 3426H 3427H(Q) 3428M 3429E 3450D 3451R(K) 3452Q (identity: 63.2 %/51.0 %) | |
| 10 | j | J 1 (B) | non-polymer(FMT) | FORMIC ACID | ||
| ALIGNMENTS |
| MODEL[2] Protein A "queryA" TEMPLATE:4yoi_B_1 identity=51.0% |
queryA 3264:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANPK:3360
:** ** *** ** * ****** ******** * **** * *** *** * ** * ** *** *** *** ** *** :
4yoi_B_1 1:SGLVKMSAPSGAVENCIVQVTCGSMTLNGLWLDNTVWCPRHIMCPADQLTDPNYDALLISKTNHSFIVQKHIGAQANLRVVAHSMVGVLLKLTVDVANPS: 100
SecStr : HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG GGGTTS HHHHHHH GGGEEEEE SSS EEE EEEEEEETTEEEEEESS TT:
ExpBur :eebeeeebebeebeebbbbbebeeeebbbbbbeebbbbbbbbbbeeeeeeebebeebeeeeeeeebebebeeeeeeebebeeeeeeebbbebebeeebee:
Contact :aa aaaa aaa a ii i i i i i
queryA 3361:TPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTD:3460
:** * * ** ********* * ** * * ******* ******* * *** *** * * * * ** * * ** * **:
4yoi_B_1 101:TPAYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTD: 200
SecStr : EEE TT EEEEEEEETTEEEEEEEEE TTS B TT TT EEEEESSS EEEEEEEEEEEETTEEEEE TTS BSSS SSSS :
ExpBur :eeeeeeeebeebebbbbbbbeebebeeeebbbbbebbbbeeebeeebbbbbbbeeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebeeeee:
Contact : aaaaa aaaaai ii iiia aa a iii
Contact : ii i
queryA 3461:TTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDV:3559
: * ** ******* ** ** * * * * * ** * * * * * * **** ******* **:
4yoi_B_1 201:KYCTINVVAWLYAAVLNGCKWFVKPTRVGIVTYNEWALSNQFTEFVGTQSIDM---LAHRTGVSVEQMLAAIQS-LHAGFQGKTILGQSTLEDEFTPDDV: 296
SecStr : B HHHHHHHHHHHHHTT TT S HHHHHHHHHTTTB HHHHH---HHHHH HHHHHHHHHH-HHH TT BTTBSS HHHH:
ExpBur :eebbbbbbbbbbbbbbeebeebeeeeebeeeebbeebeeeebbebeeeebbee---bbeebebebebbbbbbee-beeebeeeebeeeeebbbbbbbeeb:
Contact : a a aa
queryA 3560:VRQCSGVTFQ:3569
: * ** *:
4yoi_B_1 297:NMQVMGVVMQ: 306
SecStr :HHH S :
ExpBur :eeebeeeeee:
Contact : a a
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