Protein Model on 4zuh_A_1_C

#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 4zuh_A_1_C_1

Protein Model on 4zuh_A_1_C_1 (TEMPLATE: 4zuh )

CurrentView:HTML5 Change to:[JAVA (faster than HTML5)]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [298 aa]	PEDV 3C-Like protease :K4L9I6_9ALPC
2	b		C 1 (C)	polymer(polypeptide(L)) [8 aa]	peptide substrate SAVLQSGF	24T(N) 25T(M) 26T(A) 27L 41H 47E(T) 140F 141L(I) 142N 143G 144S(A) 145C(A) 163H 164H(Q) 165M(L) 166E 172H 187D 188R(Q) 189Q(P) 190T 191A(L) 192Q (identity: 47.8 %/45.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4zuh_A_1 identity=45.1%

queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSE-DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTP:  99
                : * **** *** ** * * *  *   ****** * * ******  *        *     *   ***    *** * * *  *    *  **   *  **:
4zuh_A_1       1:AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIASSTTSTIDYDYALSVLRL--HNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP:  98
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG S SSS   HHHHHHT  G--GGEEEEETTEEE EEEEEEETTEEEEEESS  TT  :    
ExpBur          :eebebeeeebeebeebbbebbbeeeebbbbbbeebbbbbbebbbeeeeeebebeebbeebee--eebebbeeeeebebeebeeeebbbebebeeebeeeb:    
Contact         :                       bbbb             b     b                                                     

queryA       100:KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
                :**      **  *  **** *   ***   ** * ** *** **  ** * **    * *** *  **  * * * ** *  **   *  * *  *    :
4zuh_A_1      99:KYTYRTVRPGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGAAGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSL: 198
SecStr          :SEEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG  SSSS        B:    
ExpBur          :eeeeeebeebebbbbbbbeebeeeeeebbbbbebebbeeebeeebbbbbbbbeeeebbbbbbbbbbebeeebbbbbbbebebbeebebbeeeeeeeeeee:    
Contact         :                                        bbbbbb                 bbbb     b              bbbbbb       

queryA       200:ITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQ: 299
                : * **** **** ***  * *         **  *             *    * * **  *    **   *  *   *  ***   * ****   * **:
4zuh_A_1     199:FTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVV--NTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILGYTSLTDEFTTGEVIRQ: 295
SecStr          : HHHHHHHHHHHHHTT  TT  S    HHHHHHHHTTTTB    --  GGGHHHHHHHS  HHHHHHHHHHHHH - TT  BTTBSS      HHHHHHH:    
ExpBur          :bbebbbbbbbbbbeeebeebebeeebebeebbeebeeeebeebe--eeeebeebeeeeebebeebbbbbeebeee-beeeebeeeeebbbbbbbebbeee:    

queryA       300:CSG: 302
                :  *:
4zuh_A_1     296:MYG: 298
SecStr          :HH :    
ExpBur          :bee:

Protein Model on 4zuh_A_1_C_1 (TEMPLATE: 4zuh )

Input Residue Numbers for Focused Sites