Protein Model on 5hyo_B_1_L

#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 5hyo_B_1_L_1

Protein Model on 5hyo_B_1_L_1 (TEMPLATE: 5hyo )

CurrentView:HTML5 Change to:[JAVA (faster than HTML5)]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	B 1 (B)	polymer(polypeptide(L)) [301 aa]	PEDV 3CLpro :A0A075EBR7_9ALPC
2	b		L 1 (B)	non-polymer(MPD)	(4S)-2-METHYL-2,4-PENTANEDIOL	140F 141L(I) 142N 144S(A) 145C 163H 164H(Q) 165M(L) 166E 172H (identity: 60.0 %/45.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5hyo_B_1 identity=45.7%

queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSE-DMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTP:  99
                : * **** *** ** * * *  *   ****** * * ******  *        *     *   ***    *** * * *  *    *  **   *  **:
5hyo_B_1       1:AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVICPRHVIASSTTSTIDYDYALSVLRL--HNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTP:  98
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGGS SS SS  HHHHHHT  G--GGEEEEETTEE  EEEEEEETTEEEEEESS  TT  :    
ExpBur          :eebeeeeeebeebeebbbebbbeeeebbbbbbeebbbbbbbbbbeeeeeebebeebeeebee--eebebbeeeeebeeeeeeeeebbbebebeeebeeee:    

queryA       100:KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
                :**      **  *  **** **  ***   ** * ** *** ** *** * **    * *** *  **  * * * ** *  **   *  * *  *    :
5hyo_B_1      99:KYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSL: 198
SecStr          : EEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG  SSSS        B:    
ExpBur          :eeeeeebeebebbbbbbbbebeeeeeebbbbbebebbeeebeeebbbbbbbebeeeebbbbbbbbbebeeebbbbbbbebebbeebebbeeebeeeeeee:    
Contact         :                                        bbb bb                 bbbb     b                           

queryA       200:ITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQ: 299
                : * **** **** ***  * *         **  *             *    * * **  *    **   *  *   *  ***   * ****   * **:
5hyo_B_1     199:FTENVLAFLYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVV--NTDCFSILAAKTGVDVQRLLASIQSLHKN-FGGKQILGYTSLTDEFTTGEVIRQ: 295
SecStr          : HHHHHHHHHHHHHTT  TT  S    HHHHHHHHTTTTB    -- TTTTHHHHHHHT  HHHHHHHHHHHHT - S   SSSSSSS     HHHHHHH:    
ExpBur          :ebbbbbbbbbbbbeeebeebebeeebeeeebbeebeeeebbebe--eeeebeebeeeeebebeebbbbbeebeee-eeeeebeeeeebbbbbbbbbbbee:    

queryA       300:CSGVTF: 305
                :  **  :
5hyo_B_1     296:MYGVNL: 301
SecStr          :HH    :    
ExpBur          :beeeee:

Protein Model on 5hyo_B_1_L_1 (TEMPLATE: 5hyo )

Input Residue Numbers for Focused Sites