#WARNING:no index is registered index 'YP_009725295.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 5e6j_D_1_F_1

Protein Model on 5e6j_D_1_F_1 (TEMPLATE: 5e6j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (D) polymer(polypeptide(L)) [313 aa] Replicase polyprotein 1ab :R1AB_CVHSA
2 b F 1 (F) polymer(polypeptide(L)) [75 aa] Polyubiquitin-B :UBB_HUMAN 1625D 1628R 1629V(S) 1632F 1633E 1636H 1638T(L) 1691N 1740N 1742D(E) (identity: 70.0 %/82.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5e6j_D_1 identity=82.7%
queryA      1566:RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLT:1665
                : ********** ***** ***************************  ****** *** ***** ******** * ***************** *** ***:
5e6j_D_1       4:KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLT: 103
SecStr          : EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE SSS   GGGTT EEEE   SHHHHHHHHHHHS   TTHHHHHHHHHHHHTTS   EETTEE:    
ExpBur          :eebebebbbbeeeeeeeebeeeebbeeebeebbbebeebbeeebeeebeeeebbbebeeeebeebbeebbeeeeeebbbebbebbeebeebebeebeebb:    
Contact         :                                                           b  bb  bb  b b                           

queryA      1666:SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV:1765
                :***********   ** *** * *** **** ******** *********** **************  * ***** * ********* ***  *** **:
5e6j_D_1     104:SIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGV: 203
SecStr          :   S SS HHHHHHHHHHTTS   BSSHHHHHHHHHHHHT  HHHHHHHHHHTT  TT    HHHHHHHHHTTB  TT EEEEEEE SSS  EEEEEEGG:    
ExpBur          :bbeeeeebbbbbbbbbbbbbbebebebebbbebbeebeeeebbbbbbbbbbbbebeeeeeeebeebbeebbebbebeebebbbbeebeeeeeeeeeeeeb:    
Contact         :                         b                                                b b                       

queryA      1766:EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD:1865
                :***********   * ** *** **  ** ******* ********* * *  *** ** *********** *** ***** **** *** ****** **:
5e6j_D_1     204:EAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTD: 303
SecStr          :GGTEEES S HHHHHH EEEE SSSSEEEEEEEEEESSEEEEEEEEEEEEE TTS SEEEEEEEETTEEEEEEEEESSSEEEEETTEEEEES EEEEEEE:    
ExpBur          :ebbbbeebbbbeebeeeeeeebeeeeebebbbeebebebbbbbbeeeeeebeeeebebbbbbeeeeeeeebbbbbeeeebbebebeeeeeeeebebebbb:    

queryA      1866:VFYKENSYTTTIK:1878
                :***** *******:
5e6j_D_1     304:VFYKETSYTTTIK: 316
SecStr          :EEEE SEEE    :    
ExpBur          :bbbebeeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123