#WARNING:no index is registered index 'YP_009725295.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 6vh1_A_1_C_1

Protein Model on 6vh1_A_1_C_1 (TEMPLATE: 6vh1 )

CurrentView:HTML5 Change to:[JAVA (faster than HTML5)] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [298 aa] Orf1a protein :A0A1L2E0X0_9BETC
2 b C 1 (A) non-polymer(QZ7) N~2~-{[(4,4-difluorocyclohexyl)oxy]carbonyl}-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide 3304H 3312M(L) 3403F 3404L 3405N(C) 3406G 3407S 3408C 3426H 3427H(Q) 3428M 3429E 3430L 3435H 3450D 3452Q (identity: 81.2 %/52.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6vh1_A_1 identity=52.0%
queryA      3263:QSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQ---AGNVQLRVIGHSMQNCVLKLKVDTANP:3359
                : **  **  *** ** ********  ********  * ***** *       ***  ***   ** * **        *** ** **   *** ** ***:
6vh1_A_1       7:HSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIXXXXXLRVVGHAMQGTLLKLTVDVANP: 106
SecStr          :           HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGGS GGG SS  HHHHHHT  GGGEEEE   -----  EEEEEEETTEEEEEESS  T:    
ExpBur          :eeebeeeeeebeebeebbbbbbbeebebbbbbbeeebbbbbbbbbeeeebeebebeebbeebeeeebebeeee-----ebbebeeeeebbbebebeeebe:    
Contact         :                                         b       b                                                  

queryA      3360:KTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGT:3459
                : ** * *    **  ********* * *     **** ******* *******         ***** ***  * * *    *  ** * * *  *   *:
6vh1_A_1     107:STPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLT: 206
SecStr          :T  SEEE    TT EEEEEEEETTEEEEEEEEE  TTS B S   TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG  SSSS      :    
ExpBur          :ebbeeeeeebeebeebbbbbbbebbeeeeeebbbbbbebbeeebeeebbbbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebebee:    
Contact         :                                           bbbbbb                 bbbbb    b              b b       

queryA      3460:DTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNY-EPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFD:3558
                :*    *** ******  **  **     *    **  *      *      **    *   ** *          *   *  *  ****  ******* *:
6vh1_A_1     207:DKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALANQFTEFVGTQSVDM---LAVKTGVAIEQLLYAIQQLY-TGFQGKQILGSTMLEDEFTPED: 302
SecStr          :  B HHHHHHHHHHHHHTT  TT  S    HHHHHHHHHTTTB      HHHHH---HHHHHT  HHHHHHHHHHHH-H  TT  BTTBSS   S  HHH:    
ExpBur          :eeebbbbbbbbbbbbbeeeeeeb