Protein Model on 2vj1_B_1_F_1 (TEMPLATE: 2vj1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(R1A_SARS2) B 1 (B) polymer(polypeptide(L)) [300 aa] SARS CORONAVIRUS MAIN PROTEINASE :A7J8L3_CVHSA
2 b F 1 (B) non-polymer(DMS) DIMETHYL SULFOXIDE 3506T 3507Q 3508D (identity: 100.0 %/96.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2vj1_B_1 identity=96.0%
queryA      3265:GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKY:3364
                :********************************* ********** ****************** ******************** * ***** *******:
2vj1_B_1       1:GFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKY: 100
SecStr          :  S      HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  HHHHTS  HHHHHTT  STT EEEETTEEE EEEEEEETTEEEEEESS  TT  EE:    
ExpBur          :beeeeebebeebebbbbbbbbeeeebbbbbbeebbbbbbbbbbeeeebeebebeebbeeeeeeebebeeeeeebebeeeeeeebbbebebeeebeebbee:    

queryA      3365:KFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTIT:3464
                :******************************** ********************************************* *********************:
2vj1_B_1     101:KFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTIT: 200
SecStr          :EE    TT EEEEEEEETTEEEEEEEEE  TTS B SS  TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSSS  SS          B H:    
ExpBur          :eeeebeebebbbbbbbeeeeeeeeebbbbbbbebbeeeebeebbbbbbbebeeebbbbbbbbbbebeeebbbbbbbebebbeebebeeeeeeeeeebebb:    

queryA      3465:VNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCS:3564
                : **************************************************************** *****************  ***************:
2vj1_B_1     201:LNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS: 300
SecStr          :HHHHHHHHHHHHTT  TT  S    HHHHHHHHGGGTB    HHHHHHTHHHHHHHT  HHHHHHHHHHHHHH  TT  BTTBSS      HHHHHHHT :    
ExpBur          :bbbbbbbbbbbeeeeeebeeeeebebeebbebbeeeebeebeeeebeebeebbeebebebeebbbbbbebbeeebeeeebbebeebebbbbbebbeebbe:    
Contact         :                                         bbb                                                        


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