#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 1p9s_A_1_C_1

Protein Model on 1p9s_A_1_C_1 (TEMPLATE: 1p9s )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [300 aa] Replicase polyprotein 1ab :R1AB_CVH22
2 b C 1 (A) non-polymer(DIO) 1,4-DIETHYLENE DIOXIDE 41H 46S(T) 165M(I) 187D (identity: 50.0 %/41.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1p9s_A_1 identity=41.9%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICT-SEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTP:  99
                : * ** * *** ** * * *  * * ****** * ********            *    *   ***    *   * * *       ** **   *  **:
1p9s_A_1       1:AGLRKUAQPSGFVEKCVVRVCYGNTVLNGLWLGDIVYCPRHVIASNTTSAIDYDHEYSIURL--HNFSIISGTAFLGVVGATUHGVTLKIKVSQTNUHTP:  98
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG S TTS   HHHHHHT  G--GGEEEEETTEEE EEEEEEETTEEEEEES   TT  :    
ExpBur          :eebeeeebebeebeebbbebbbeebebbbbbbeebbbbbbbbbbeeeeeebebeebeeeeee--eebebbeeeeebeeeebeeeebbbebebeeebeeeb:    
Contact         :                                        b     b                                                     

queryA       100:KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
                :   *     *  *  **** *   **     * * ** *** ** *** * *     * * * *  **  * * *    *  ** * *    *       :
1p9s_A_1      99:RHSFRTLKSGEGFNILACYDGCAQGVFGVNURTNWTIRGSFINGACGSPGYNLKNGEVEFVYUHQIELGSGSHVGSSFDGVUYGGFEDQPNLQVESANQU: 198
SecStr          :SEEE    TT EEEEEEESSSSEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BGGG  SSSS        B:    
ExpBur          :eeeeeebeebeebbbbbbeebeeeeeebbbbbbbebbeeebeebbbbbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeebebeeeee:    
Contact         :                                                                 b                     b            

queryA       200:ITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQ: 299
                : **** * ****  **  * *          *  *             *    * * **  *          * **  *  ***   * ***    ** *:
1p9s_A_1     199:LTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGFTAUNGE--DAFSILAAKTGVCVERLLHAI-QVLNNGFGGKQILGYSSLNDEFSINEVVKQ: 295
SecStr          : HHHHHHHHHHHHHTT  TT  S    HHHHHHHHTTTTB     G--GG SHHHHTTT  HHHHHHHH-HHHHT  TT  BTTBSS      HHHHHHH:    
ExpBur          :bbebbbbbbbbbbeeebeebbeeeebebeebbebbeeeebbebeee--eebebeeeeeebbbbbbbbbb-eebeeebeeeebeeeeebbbebbbeebbeb:    

queryA       300:CSGV: 303
                :  **:
1p9s_A_1     296:UFGV: 299
SecStr          :HH  :    
ExpBur          :eeee:    


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