#WARNING:no index is registered index 'YP_009725301.1' in 'http://www.uniprot.org/uniprot/' Protein Model on 2q6f_B_1_A_1

Protein Model on 2q6f_B_1_A_1 (TEMPLATE: 2q6f )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) B 1 (B) polymer(polypeptide(L)) [295 aa] Infectious bronchitis virus (IBV) main protease :Q3Y5H1_9CORO
2 b A 1 (A) polymer(polypeptide(L)) [294 aa] Infectious bronchitis virus (IBV) main protease :Q3Y5H1_9CORO 1S 2G 4R(K) 6M(L) 7A(V) 9P 10S 11G(S) 14E 122P(V) 123S(I) 124G 125V(L) 126Y 127Q(P) 137K(R) 138G(A) 139S 140F 141L 166E 170G(A) 172H 283G 284S(Q) 285A(Y) 286L(N) 299Q (identity: 50.0 %/43.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2q6f_B_1 identity=43.4%
queryA         1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGN-VQLRVIGHSMQNCVLKLKVDTANPKTP:  99
                :*** *   **  ** * * *      ****** *  ******             * *    ** * *   * * * *        ** *    **  **:
2q6f_B_1       3:SGFKKLVSPSSAVEKCIVSVSYRGNNLNGLWLGDSIYCPRHVLG---KFSGDQWGDVLNLANNHEFEVVTQNGVTLNVVSRRLKGAVLILQTAVANAETP:  99
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG ---S  TTHHHHHHHTS GGG EEE SSS EE EEEEEEETTEEEEEESS  TT  :    
ExpBur          :eeeeeeebebeebeebbbbbbbeeeebbbbbbeebbbbbbebbe---eeeeeebbeebeebeeeebebebeeeeebebeeeeeeebbbbbebeeebeeee:    
Contact         :bb b bb bbb  b                                                                                      

queryA       100:KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTT: 199
                :*****    *  *     * *   * *   ** * **  *** * ********    * * **** ***   * **** * ***  **   **    *  :
2q6f_B_1     100:KYKFVKANCGDSFTIACSYGGTVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNL: 199
SecStr          :SEEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEEETTTEEEEE TTS BGGG  SSSS        B:    
ExpBur          :eeebbebeebeebbbbbbeebebeeebebbbbebbbbeeebeeebbbbbbbbeeeeebbbbbbbbbebeeebbbbbbbebebbeebebeeeeeeeeeeee:    
Contact         :                      bbbbbb         bbbbb                        b   b b                           

queryA       200:ITVNVLAWLYAAVIN-------GDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRT--ILGSALLEDE: 290
                : * *  ****** *           * *   *    * *  *      *           *** **    * *  *              ***    ***:
2q6f_B_1     200:VTNNIVAWLYAAIISVXXXXXXXPKW-LESTTVSIEDYNRWASDNGFTPFSTSTA--ITKLSAITGV---DVCKLLRTIMVKSAQWGSDPILGQYNFEDE: 293
SecStr          : HHHHHHHHHHHHHH ------- TT-  SS   HHHHHHHHHHHTB      HH--HHHHHHHH  --- HHHHHHHHHHHHH   S  BTTBSS   S:    
ExpBur          :bbbbbbbbbbbbbeee-------eeb-eeeeebeeeebeeebeeeebbebeebeb--beebeeeeeb---ebbebbebbbebeeebeeeebeeeeebbbb:    
Contact         :                                                                                            bbbb    

queryA       291:FTPFDVVRQ: 299
                : **  *  *:
2q6f_B_1     294:LTPESVFNQ: 302
SecStr          :S HHHHHHT:    
ExpBur          :bbbebbeeb:    
Contact         :        b                                                                                           


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