Modeling a 3D structure on 1p9m_B_1_A_1 by the Modeller program (TEMPLATE: 1p9m)

If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script:

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 1p9m.pdb

  4. execute command:


Modeller scripts for each subunit

    Subunit 1

  1. Download modeller script:

  2. Download alignment: alignment1.ali

  3. Download template PDB file: 1p9m_B_1.pdb

  4. execute command:


    Subunit 2

  5. Download template PDB file: 1p9m_A_1.pdb

    Merge all the subunit models

  6. execute command:

    cat query1.B99990001.pdb 1p9m_A_1.pdb > model.pdb

Alignment for protein A:global both for query and template[=>local for query,global for template]