#WARNING:no index is registered index 'YP_009725295.1' in 'http://www.uniprot.org/uniprot/' Modeling a 3D structure on 2fe8_A_1_A_2_B_1_B_2_D_1_D_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2_I_1_I_2_J_1_J_2_K_1_K_2_L_1_L_2_M_1_M_2 by the Modeller program

Modeling a 3D structure on 2fe8_A_1_A_2_B_1_B_2_D_1_D_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2_I_1_I_2_J_1_J_2_K_1_K_2_L_1_L_2_M_1_M_2 by the Modeller program (TEMPLATE: 2fe8) assembly_id:6)


If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script: model_complex.py

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 2fe8.pdb

  4. execute command:

    mod9 model_complex.py

Modeller scripts for each subunit

    Subunit 1

  1. Download modeller script: model1.py

  2. Download alignment: alignment1.ali

  3. Download template PDB file: 2fe8_A_1.pdb

  4. execute command:

    mod9 model1.py

    Subunit 2

  5. Download template PDB file: 2fe8_A_2.pdb

    Subunit 3

  6. Download template PDB file: 2fe8_B_1.pdb

    Subunit 4

  7. Download template PDB file: 2fe8_B_2.pdb

    Subunit 5

  8. Download template PDB file: 2fe8_D_1.pdb

    Subunit 6

  9. Download template PDB file: 2fe8_D_2.pdb

    Subunit 7

  10. Download template PDB file: 2fe8_E_1.pdb

    Subunit 8

  11. Download template PDB file: 2fe8_E_2.pdb

    Subunit 9

  12. Download template PDB file: 2fe8_F_1.pdb

    Subunit 10

  13. Download template PDB file: 2fe8_F_2.pdb

    Subunit 11

  14. Download template PDB file: 2fe8_G_1.pdb

    Subunit 12

  15. Download template PDB file: 2fe8_G_2.pdb

    Subunit 13

  16. Download template PDB file: 2fe8_H_1.pdb

    Subunit 14

  17. Download template PDB file: 2fe8_H_2.pdb

    Subunit 15

  18. Download template PDB file: 2fe8_I_1.pdb

    Subunit 16

  19. Download template PDB file: 2fe8_I_2.pdb

    Subunit 17

  20. Download template PDB file: 2fe8_J_1.pdb

    Subunit 18

  21. Download template PDB file: 2fe8_J_2.pdb

    Subunit 19

  22. Download template PDB file: 2fe8_K_1.pdb

    Subunit 20

  23. Download template PDB file: 2fe8_K_2.pdb

    Subunit 21

  24. Download template PDB file: 2fe8_L_1.pdb

    Subunit 22

  25. Download template PDB file: 2fe8_L_2.pdb

    Subunit 23

  26. Download template PDB file: 2fe8_M_1.pdb

    Subunit 24

  27. Download template PDB file: 2fe8_M_2.pdb

    Merge all the subunit models

  28. execute command:

    cat query1.B99990001.pdb 2fe8_A_2.pdb 2fe8_B_1.pdb 2fe8_B_2.pdb 2fe8_D_1.pdb 2fe8_D_2.pdb 2fe8_E_1.pdb 2fe8_E_2.pdb 2fe8_F_1.pdb 2fe8_F_2.pdb 2fe8_G_1.pdb 2fe8_G_2.pdb 2fe8_H_1.pdb 2fe8_H_2.pdb 2fe8_I_1.pdb 2fe8_I_2.pdb 2fe8_J_1.pdb 2fe8_J_2.pdb 2fe8_K_1.pdb 2fe8_K_2.pdb 2fe8_L_1.pdb 2fe8_L_2.pdb 2fe8_M_1.pdb 2fe8_M_2.pdb > model.pdb


Alignment for protein A:local for query, global for template[=>global both for query and template]