#WARNING:no index is registered index 'YP_009725295.1' in 'http://www.uniprot.org/uniprot/' Modeling a 3D structure on 2ahm_A_1_A_2_B_1_B_2_C_1_C_2_D_1_D_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2_I_1_I_2_J_1_J_2_K_1_K_2_L_1_L_2_M_1_M_2_N_1_N_2 by the Modeller program

Modeling a 3D structure on 2ahm_A_1_A_2_B_1_B_2_C_1_C_2_D_1_D_2_E_1_E_2_F_1_F_2_G_1_G_2_H_1_H_2_I_1_I_2_J_1_J_2_K_1_K_2_L_1_L_2_M_1_M_2_N_1_N_2 by the Modeller program (TEMPLATE: 2ahm) assembly_id:1)


If you install the Modeller program in your computer, you can model a full-atom 3D structure of the complex using following files.

Modeller scripts for complex

  1. Download modeller python script: model_complex.py

  2. Download alignment file: alignment_complex.ali

  3. Download template PDB file: 2ahm.pdb

  4. execute command:

    mod9 model_complex.py

Modeller scripts for each subunit

    Subunit 1

  1. Download template PDB file: 2ahm_A_1.pdb

    Subunit 2

  2. Download template PDB file: 2ahm_A_2.pdb

    Subunit 3

  3. Download template PDB file: 2ahm_B_1.pdb

    Subunit 4

  4. Download template PDB file: 2ahm_B_2.pdb

    Subunit 5

  5. Download template PDB file: 2ahm_C_1.pdb

    Subunit 6

  6. Download template PDB file: 2ahm_C_2.pdb

    Subunit 7

  7. Download template PDB file: 2ahm_D_1.pdb

    Subunit 8

  8. Download template PDB file: 2ahm_D_2.pdb

    Subunit 9

  9. Download template PDB file: 2ahm_E_1.pdb

    Subunit 10

  10. Download template PDB file: 2ahm_E_2.pdb

    Subunit 11

  11. Download template PDB file: 2ahm_F_1.pdb

    Subunit 12

  12. Download template PDB file: 2ahm_F_2.pdb

    Subunit 13

  13. Download template PDB file: 2ahm_G_1.pdb

    Subunit 14

  14. Download template PDB file: 2ahm_G_2.pdb

    Subunit 15

  15. Download modeller script: model15.py

  16. Download alignment: alignment15.ali

  17. Download template PDB file: 2ahm_H_1.pdb

  18. execute command:

    mod9 model15.py

    Subunit 16

  19. Download template PDB file: 2ahm_H_2.pdb

    Subunit 17

  20. Download template PDB file: 2ahm_I_1.pdb

    Subunit 18

  21. Download template PDB file: 2ahm_I_2.pdb

    Subunit 19

  22. Download template PDB file: 2ahm_J_1.pdb

    Subunit 20

  23. Download template PDB file: 2ahm_J_2.pdb

    Subunit 21

  24. Download template PDB file: 2ahm_K_1.pdb

    Subunit 22

  25. Download template PDB file: 2ahm_K_2.pdb

    Subunit 23

  26. Download template PDB file: 2ahm_L_1.pdb

    Subunit 24

  27. Download template PDB file: 2ahm_L_2.pdb

    Subunit 25

  28. Download template PDB file: 2ahm_M_1.pdb

    Subunit 26

  29. Download template PDB file: 2ahm_M_2.pdb

    Subunit 27

  30. Download template PDB file: 2ahm_N_1.pdb

    Subunit 28

  31. Download template PDB file: 2ahm_N_2.pdb

    Merge all the subunit models

  32. execute command:

    cat 2ahm_A_1.pdb 2ahm_A_2.pdb 2ahm_B_1.pdb 2ahm_B_2.pdb 2ahm_C_1.pdb 2ahm_C_2.pdb 2ahm_D_1.pdb 2ahm_D_2.pdb 2ahm_E_1.pdb 2ahm_E_2.pdb 2ahm_F_1.pdb 2ahm_F_2.pdb 2ahm_G_1.pdb 2ahm_G_2.pdb query15.B99990001.pdb 2ahm_H_2.pdb 2ahm_I_1.pdb 2ahm_I_2.pdb 2ahm_J_1.pdb 2ahm_J_2.pdb 2ahm_K_1.pdb 2ahm_K_2.pdb 2ahm_L_1.pdb 2ahm_L_2.pdb 2ahm_M_1.pdb 2ahm_M_2.pdb 2ahm_N_1.pdb 2ahm_N_2.pdb > model.pdb


Alignment for protein A:local for query, global for template[=>global both for query and template]