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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
56360 75 11 P0DTC4(VEMP_SARS2) RecName: Full=Envelope small membrane protein {ECO:0000255|HAMAP-Rule:MF_04204}; Short=E protein {ECO:0000255|HAMAP-Rule:MF_04204}; Short=sM protein {ECO:0000255|HAMAP-Rule:MF_04204};
QUERYSEQ
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPDLLV
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC4(VEMP_SARS2)]

75
region name description
1-75 CHAIN /note="Envelope small membrane protein" /id="PRO_0000449651"
1-16 TOPO_DOM /note="Virion surface"
17-37 TRANSMEM /note="Helical"
38-75 TOPO_DOM /note="Intravirion"

MONOMER
75
pdb_id a1 identity[%]2 description
2mm4 A 91.4 VEMP_CVHSA Envelope small membrane protein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HOMO
75 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7k3g[5] A VEMP_SARS2 Envelope small membrane protein[31 aa] E 100.0
/100.0
10
/10
VEMP_SARS2 Envelope small membrane protein
7k3g[5] D VEMP_SARS2 Envelope small membrane protein[31 aa] E 100.0
/100.0
10
/10
VEMP_SARS2 Envelope small membrane protein
5x29[5] B VEMP_CVHSA Envelope small membrane protein[58 aa] C 100.0
/91.4
8
/8
VEMP_CVHSA Envelope small membrane protein
5x29[5] D VEMP_CVHSA Envelope small membrane protein[58 aa] C 100.0
/91.4
7
/7
VEMP_CVHSA Envelope small membrane protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.