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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
35923 419 100 P0DTC9(NCAP_SARS2) RecName: Full=Nucleoprotein {ECO:0000255|HAMAP-Rule:MF_04096};AltName: Full=Nucleocapsid protein {ECO:0000255|HAMAP-Rule:MF_04096}; Short=NC {ECO:0000255|HAMAP-Rule:MF_04096}; Short=Protein N {ECO:0000255|HAMAP-Rule:MF_04096};
QUERYSEQ
MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRN
PANNAAIVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKH
WPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMSSADSTQA
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P0DTC9(NCAP_SARS2)]

419
region name description
1-419 CHAIN /note="Nucleoprotein" /id="PRO_0000449656"
41-186 REGION /note="RNA-binding"
258-361 REGION /note="Dimerization"
1-419 DISORDER predicted by DISOPRED (1-45,177-217,229-257,368-392,409-419)

MONOMER
419
pdb_id a1 identity[%]2 description
6yi3 A 99.3 NCAP_SARS2 Nucleoprotein
6yun B 100.0 NCAP_SARS2 Nucleoprotein
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
COMPOUND
419 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6kl6[1] E DJU
N,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)meth..
D 57.1
/62.2
7
/7
A0A0D3MU65_9BETC Nucleoprotein
6kl6[1] E DJU
N,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)meth..
B 83.3
/61.2
6
/6
A0A0D3MU65_9BETC Nucleoprotein
6kl5[1] E DJO
(phenylmethyl) (2S)-2-(hydroxymethyl)-2,3-dihydroi..
C 50.0
/62.1
4
/4
A0A0D3MU65_9BETC Nucleoprotein
6kl5[1] E DJO
(phenylmethyl) (2S)-2-(hydroxymethyl)-2,3-dihydroi..
A 75.0
/60.5
4
/4
A0A0D3MU65_9BETC Nucleoprotein
4lm7[1] B U5P
URIDINE-5'-MONOPHOSPHATE[21 atoms]
A 80.0
/50.0
10
/14
Q6SA23_CVHOC Nucleoprotein
4li4[1] B AMP
ADENOSINE MONOPHOSPHATE[23 atoms]
A 80.0
/50.0
10
/14
Q6SA23_CVHOC Nucleoprotein
4lmt[1] B CQD
6-chloro-7-{[2-(morpholin-4-yl)ethyl]amino}quinoli..
A 83.3
/49.6
6
/10
Q6SA23_CVHOC Nucleoprotein
4lmc[1] B C5P
CYTIDINE-5'-MONOPHOSPHATE[21 atoms]
A 88.9
/49.6
9
/13
Q6SA23_CVHOC Nucleoprotein
4lm9[1] B 5GP
GUANOSINE-5'-MONOPHOSPHATE[24 atoms]
A 80.0
/49.6
10
/14
Q6SA23_CVHOC Nucleoprotein
4kxj[1] B P34
N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTH..
A 50.0
/49.2
6
/10
Q6SA23_CVHOC Nucleoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
419 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6vyo[8] H ZN
ZINC ION[1 atoms]
A 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
6wkp[8] H ZN
ZINC ION[1 atoms]
B 100.0
/100.0
1
/1
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6wji[4] H CL
CHLORIDE ION[1 atoms]
A 100.0
/100.0
1
/1
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6wji[6] N CL
CHLORIDE ION[1 atoms]
F 100.0
/100.0
1
/1
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6g13[1] I CL
CHLORIDE ION[1 atoms]
B 50.0
/55.1
2
/2
A0A0D3MU51_9BETC Nucleoprotein
6wji[3] K CL
CHLORIDE ION[1 atoms]
D 100.0
/100.0
2
/2
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6vyo[4] O CL
CHLORIDE ION[1 atoms]
D 100.0
/100.0
5
/5
NCAP_SARS2 Nucleoprotein
6vyo[4] I CL
CHLORIDE ION[1 atoms]
D 100.0
/100.0
1
/1
NCAP_SARS2 Nucleoprotein
4ud1[3] N NH4
AMMONIUM ION[1 atoms]
E 0.0
/60.9
2
/2
T2B9R0_9BETC N PROTEIN
4ud1[1] J NH4
AMMONIUM ION[1 atoms]
C 100.0
/59.1
1
/1
T2B9R0_9BETC N PROTEIN
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
419 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
6wkp[7] C NCAP_SARS2 SARS-CoV-2 nucleocapsid protein[120 aa] B 100.0
/100.0
5
/5
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6vyo[7] A NCAP_SARS2 Nucleoprotein[124 aa] B 100.0
/100.0
12
/12
NCAP_SARS2 Nucleoprotein
6wkp[1] A NCAP_SARS2 SARS-CoV-2 nucleocapsid protein[103 aa] D 100.0
/100.0
6
/6
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6wkp[1] A NCAP_SARS2 SARS-CoV-2 nucleocapsid protein[103 aa] B 100.0
/100.0
8
/8
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
2cjr[38] H NCAP_CVHSA NUCLEOCAPSID PROTEIN[110 aa] G 98.0
/95.4
49
/49
NCAP_CVHSA NUCLEOCAPSID PROTEIN
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] A 100.0
/95.9
8
/8
NCAP_CVHSA Nucleocapsid protein
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] B 100.0
/95.8
3
/3
NCAP_CVHSA Nucleocapsid protein
2gib[2] B NCAP_CVHSA Nucleocapsid protein[96 aa] A 100.0
/95.9
1
/1
NCAP_CVHSA Nucleocapsid protein
2gib[2] A NCAP_CVHSA Nucleocapsid protein[97 aa] A 100.0
/95.9
6
/6
NCAP_CVHSA Nucleocapsid protein
6kl2[12] A A0A0D3MU65_9BETC Nucleoprotein[116 aa] C 54.5
/62.5
11
/11
A0A0D3MU65_9BETC Nucleoprotein
6g13[4] B A0A0D3MU51_9BETC Nucleoprotein[113 aa] D 58.6
/55.1
58
/58
A0A0D3MU51_9BETC Nucleoprotein
5n4k[2] A NCAP_CVHNL Nucleoprotein[130 aa] B 41.7
/47.6
12
/22
NCAP_CVHNL Nucleoprotein
2gec[1] A NCAP_IBVG Nucleocapsid protein[138 aa] B 35.0
/40.7
20
/25
NCAP_IBVG Nucleocapsid protein
2gec[1] B NCAP_IBVG Nucleocapsid protein[139 aa] A 27.8
/40.7
18
/18
NCAP_IBVG Nucleocapsid protein
5epw[2] B NCAP_CVHNL Nucleoprotein[110 aa] A 31.4
/38.0
51
/54
NCAP_CVHNL Nucleoprotein
2ge8[10] A NCAP_IBVG Nucleocapsid protein[112 aa] B 34.5
/29.1
55
/57
NCAP_IBVG Nucleocapsid protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
419 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4ud1[2] L GOL
GLYCEROL[6 atoms]
C 66.7
/59.1
3
/3
T2B9R0_9BETC N PROTEIN
6vyo[2] K GOL
GLYCEROL[6 atoms]
B 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
6vyo[2] P GOL
GLYCEROL[6 atoms]
C 100.0
/100.0
6
/6
NCAP_SARS2 Nucleoprotein
4ud1[1] M GOL
GLYCEROL[6 atoms]
D 0.0
/60.7
3
/3
T2B9R0_9BETC N PROTEIN
5n4k[4] N SO4
SULFATE ION[5 atoms]
B 33.3
/47.6
3
/3
NCAP_CVHNL Nucleoprotein
6wzq[3] J SO4
SULFATE ION[5 atoms]
D 100.0
/100.0
1
/1
NCAP_SARS2 Nucleoprotein
2gib[5] C SO4
SULFATE ION[5 atoms]
A 100.0
/95.9
2
/2
NCAP_CVHSA Nucleocapsid protein
5n4k[3] P SO4
SULFATE ION[5 atoms]
B 66.7
/47.6
3
/5
NCAP_CVHNL Nucleoprotein
5n4k[1] I SO4
SULFATE ION[5 atoms]
A 50.0
/46.0
2
/2
NCAP_CVHNL Nucleoprotein
5n4k[2] N SO4
SULFATE ION[5 atoms]
A 0.0
/46.0
1
/1
NCAP_CVHNL Nucleoprotein
6wzq[1] I SO4
SULFATE ION[5 atoms]
C 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
6wzq[1] F SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
1
/1
NCAP_SARS2 Nucleoprotein
6wkp[6] F MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms]
B 100.0
/100.0
4
/4
NCAP_SARS2 SARS-CoV-2 nucleocapsid protein
6vyo[6] G MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms]
A 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
7c22[2] G ACT
ACETATE ION[4 atoms]
D 100.0
/100.0
1
/1
NCAP_SARS2 Nucleoprotein
7c22[2] G ACT
ACETATE ION[4 atoms]
C 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
2ofz[1] B EDO
1,2-ETHANEDIOL[4 atoms]
A 100.0
/92.1
2
/2
NCAP_CVHSA Nucleocapsid protein
4ud1[2] K IMD
IMIDAZOLE[5 atoms]
C 100.0
/59.1
1
/1
T2B9R0_9BETC N PROTEIN
7c22[1] F PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 100.0
/100.0
3
/3
NCAP_SARS2 Nucleoprotein
6g13[1] G PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 80.0
/55.2
5
/5
A0A0D3MU51_9BETC Nucleoprotein
6g13[3] F TMO
trimethylamine oxide[5 atoms]
A 66.7
/55.2
3
/3
A0A0D3MU51_9BETC Nucleoprotein
6g13[1] E TMO
trimethylamine oxide[5 atoms]
A 0.0
/55.2
1
/1
A0A0D3MU51_9BETC Nucleoprotein
4j3k[1] B TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms]
A 44.4
/50.0
9
/9
Q6SA23_CVHOC Nucleoprotein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.