[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
PSIBLAST 2.2.27+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
563,082 sequences; 202,799,066 total letters
Results from round 1
Query= sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=ORF14 PE=3 SV=1
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute ... 145 5e-45
sp|Q3I5I5|Y14_BCRP3 Uncharacterized protein 14 OS=Bat coronavir... 106 5e-30
sp|Q7TLC7|Y14_CVHSA Uncharacterized protein 14 OS=Human SARS co... 106 6e-30
sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 OS=Mesocricetus aura... 30.4 1.2
sp|O60449|LY75_HUMAN Lymphocyte antigen 75 OS=Homo sapiens OX=9... 30.0 1.7
sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus OX=1... 29.3 3.2
> sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=ORF14 PE=3
SV=1
Length=73
Score = 145 bits (365), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM
Sbjct 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
Query 61 AVMLLLLCCCLTD 73
AVMLLLLCCCLTD
Sbjct 61 AVMLLLLCCCLTD 73
> sp|Q3I5I5|Y14_BCRP3 Uncharacterized protein 14 OS=Bat coronavirus
Rp3/2004 OX=349344 GN=ORF14 PE=4 SV=1
Length=70
Score = 106 bits (265), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 58/70 (83%), Gaps = 0/70 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
ML SCYNFLKEQHCQKASTQKGAEAAVKPLL HHVVA +QEIQL AAVGE+L LEWLA
Sbjct 1 MLPSCYNFLKEQHCQKASTQKGAEAAVKPLLALHHVVAVIQEIQLLAAVGEILQLEWLAE 60
Query 61 AVMLLLLCCC 70
AV L CC
Sbjct 61 AVKLPSRYCC 70
> sp|Q7TLC7|Y14_CVHSA Uncharacterized protein 14 OS=Human SARS
coronavirus OX=694009 GN=ORF14 PE=1 SV=1
Length=70
Score = 106 bits (264), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 57/70 (81%), Gaps = 0/70 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
ML CYNFLKEQHCQKASTQ+ AEAAVKPLL PHHVVA +QEIQL AAVGE+LLLEWLA
Sbjct 1 MLPPCYNFLKEQHCQKASTQREAEAAVKPLLAPHHVVAVIQEIQLLAAVGEILLLEWLAE 60
Query 61 AVMLLLLCCC 70
V L CC
Sbjct 61 VVKLPSRYCC 70
> sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 OS=Mesocricetus auratus
OX=10036 GN=LY75 PE=2 SV=1
Length=1722
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 17/61 (28%), Positives = 30/61 (49%), Gaps = 0/61 (0%)
Query 4 SCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVM 63
SCYNF+ ++ + TQK + + L +++ E + V +LL ++A VM
Sbjct 1254 SCYNFMITKNRHRTITQKEVHSLCQKLHSKAQILSIRNEEENNFVVEQLLYFNYIASWVM 1313
Query 64 L 64
L
Sbjct 1314 L 1314
> sp|O60449|LY75_HUMAN Lymphocyte antigen 75 OS=Homo sapiens OX=9606
GN=LY75 PE=1 SV=3
Length=1722
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 16/60 (27%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
> sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus OX=10090
GN=Ly75 PE=1 SV=2
Length=1723
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/61 (28%), Positives = 29/61 (48%), Gaps = 0/61 (0%)
Query 4 SCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVM 63
SCYNF+ + K T + ++ + L H ++ E + V +LL ++A VM
Sbjct 1255 SCYNFMITNNRHKTVTPEEVQSTCEKLHSKAHSLSIRNEEENTFVVEQLLYFNYIASWVM 1314
Query 64 L 64
L
Sbjct 1315 L 1315
Lambda K H a alpha
0.327 0.134 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4968890528
Results from round 2
Query= sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=ORF14 PE=3 SV=1
Length=73
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|Q7TLC7|Y14_CVHSA Uncharacterized protein 14 OS=Human SARS co... 106 7e-30
sp|Q3I5I5|Y14_BCRP3 Uncharacterized protein 14 OS=Bat coronavir... 105 2e-29
sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute ... 101 8e-28
Sequences not found previously or not previously below threshold:
sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 OS=Mesocricetus aura... 30.8 1.0
sp|O60449|LY75_HUMAN Lymphocyte antigen 75 OS=Homo sapiens OX=9... 30.4 1.3
sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus OX=1... 30.0 1.5
sp|P44240|VG47_HAEIN Mu-like prophage FluMu protein gp47 OS=Hae... 28.1 6.0
> sp|Q7TLC7|Y14_CVHSA Uncharacterized protein 14 OS=Human SARS
coronavirus OX=694009 GN=ORF14 PE=1 SV=1
Length=70
Score = 106 bits (264), Expect = 7e-30, Method: Composition-based stats.
Identities = 54/70 (77%), Positives = 57/70 (81%), Gaps = 0/70 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
ML CYNFLKEQHCQKASTQ+ AEAAVKPLL PHHVVA +QEIQL AAVGE+LLLEWLA
Sbjct 1 MLPPCYNFLKEQHCQKASTQREAEAAVKPLLAPHHVVAVIQEIQLLAAVGEILLLEWLAE 60
Query 61 AVMLLLLCCC 70
V L CC
Sbjct 61 VVKLPSRYCC 70
> sp|Q3I5I5|Y14_BCRP3 Uncharacterized protein 14 OS=Bat coronavirus
Rp3/2004 OX=349344 GN=ORF14 PE=4 SV=1
Length=70
Score = 105 bits (261), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/70 (80%), Positives = 58/70 (83%), Gaps = 0/70 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
ML SCYNFLKEQHCQKASTQKGAEAAVKPLL HHVVA +QEIQL AAVGE+L LEWLA
Sbjct 1 MLPSCYNFLKEQHCQKASTQKGAEAAVKPLLALHHVVAVIQEIQLLAAVGEILQLEWLAE 60
Query 61 AVMLLLLCCC 70
AV L CC
Sbjct 61 AVKLPSRYCC 70
> sp|P0DTD3|Y14_SARS2 Uncharacterized protein 14 OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=ORF14 PE=3
SV=1
Length=73
Score = 101 bits (251), Expect = 8e-28, Method: Composition-based stats.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM
Sbjct 1 MLQSCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAM 60
Query 61 AVMLLLLCCCLTD 73
AVMLLLLCCCLTD
Sbjct 61 AVMLLLLCCCLTD 73
> sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 OS=Mesocricetus auratus
OX=10036 GN=LY75 PE=2 SV=1
Length=1722
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (48%), Gaps = 0/65 (0%)
Query 4 SCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVM 63
SCYNF+ ++ + TQK + + L +++ E + V +LL ++A VM
Sbjct 1254 SCYNFMITKNRHRTITQKEVHSLCQKLHSKAQILSIRNEEENNFVVEQLLYFNYIASWVM 1313
Query 64 LLLLC 68
L +
Sbjct 1314 LGVTY 1318
> sp|O60449|LY75_HUMAN Lymphocyte antigen 75 OS=Homo sapiens OX=9606
GN=LY75 PE=1 SV=3
Length=1722
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (47%), Gaps = 0/64 (0%)
Query 5 CYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVML 64
CYNF+ ++ A+TQ + L H+++ E + + +LL ++A VML
Sbjct 1255 CYNFIITKNRHMATTQDEVHTKCQKLNPKSHILSIRDEKENNFVLEQLLYFNYMASWVML 1314
Query 65 LLLC 68
+
Sbjct 1315 GITY 1318
> sp|Q60767|LY75_MOUSE Lymphocyte antigen 75 OS=Mus musculus OX=10090
GN=Ly75 PE=1 SV=2
Length=1723
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 0/65 (0%)
Query 4 SCYNFLKEQHCQKASTQKGAEAAVKPLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAVM 63
SCYNF+ + K T + ++ + L H ++ E + V +LL ++A VM
Sbjct 1255 SCYNFMITNNRHKTVTPEEVQSTCEKLHSKAHSLSIRNEEENTFVVEQLLYFNYIASWVM 1314
Query 64 LLLLC 68
L +
Sbjct 1315 LGITY 1319
> sp|P44240|VG47_HAEIN Mu-like prophage FluMu protein gp47 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20
/ Rd) OX=71421 GN=HI_1520 PE=3 SV=1
Length=355
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 29 PLLVPHHVVATVQEIQLQAAVGELLLLEWLAMAV 62
P L H+V+ + I + GE + L+WLA +
Sbjct 24 PTLKRHNVIGVINRICAALSAGEHMHLDWLARQI 57
Lambda K H a alpha
0.323 0.137 0.427 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0412 0.140 1.90 42.6 43.6
Effective search space used: 4968890528
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Aug 19, 2020 9:15 PM
Number of letters in database: 202,799,066
Number of sequences in database: 563,082
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40